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MGI Platform Publications

2019-06-13

species

Publications

Journal Title

IF

Year

Techology

1

Leaf armor

Comparative transcriptome analysis of chemosensory genes in two sister leaf beetles provides insights into chemosensory speciation

Insect Biochemistry and Molecular Biology

3.756

2016

RNA-Seq

2

human

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

Clinical Epigenetics

4.987

2016

Small RNA

3

human

Establishment of a normal-derived estrogen receptor-positive cell line comparable to the prevailing human breast cancer subtype

Oncotarget

5.168

2017

RNA-Seq

4

human

Overexpression of placenta specific 8 is associated with malignant progression and poor prognosis of clear cell renal cell carcinoma

International Urology and Nephrology

1.564

2017

RNA-Seq

5

Rice

Overexpression of OsHSP18.0-CI Enhances Resistance to Bacterial Leaf Streak in Rice

Rice

3.739

2017

RNA-Seq

6

Klebsiella

Coordination of metabolic pathways: Enhanced carbon conservation in 1,3-propanediol production by coupling with optically pure lactate biosynthesis

Metabolic Engineering

8.142

2017

RNA-Seq

7

human

A reference human genome dataset of the BGISEQ-500 sequencer

GigaScience

7.267

2017

WGS

8

Rhodiola crenulata

Draft genome sequence of the Tibetan medicinal herb, Rhodiola crenulata

GigaScience

7.267

2017

RNA-Seq

9

Drosophila

Drug induces depression-like phenotypes and alters gene expression profiles in Drosophila

Brain Research Bulletin

3.033

2017

RNA-Seq

10

Dog&wolf

Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

GigaScience

7.267

2017

WGS

11

human

Recessive mutation in EXOSC3 associates with mitochondrial dysfunction and pontocerebellar hypoplasia

Mitochondrion

3.704

2017

RNA-Seq

12

oilseed rape

Genome-scale mRNA transcriptomic insights into the responses of oilseed rape (Brassica napus L.) to varying boron availabilities

Plant and Soil

3.052

2017

RNA-Seq

13

Mouse

Nuclear carbonic anhydrase 6B associates with PRMT5 to epigenetically promote IL-12 expression in innate response

PNAS

9.661

2017

RNA-Seq&ChIP-Seq

14

human

Methyltransferase SETD2-Mediated Methylation of STAT1 Is Critical for Interferon Antiviral Activity

Cell

30.41

2017

RNA-Seq

15

Arabidopsis thaliana

AtACS8 plays a critical role in the early biosynthesis of ethylene elicited by copper ions in Arabidopsis

Journal of Cell Science

4.431

2017

RNA-Seq

16

human

The FOXN3-NEAT1-SIN3A repressor complex promotes progression of hormonally responsive breast cancer

The Journal of Clinical Investigation

12.784

2017

ChIP-Seq

17

Amphioxus

Transcriptome-wide analysis of immune-responsive microRNAs against poly (I:C) challenge in Branchiostoma belcheri by deep sequencing and bioinformatics

Oncotarget

5.168

2017

Small RNA

18

human

PBRM1 restricts the basal activity of innate immune system through repressing RIG-I-like receptor signaling and is a potential prognostic biomarker for colon cancer

The Journal of Pathology

6.894

2017

RNA-Seq

19

Amphioxus

Exploring gene expression changes in the amphioxus gill after poly(I:C) challenge using digital expression profiling

Fish & Shellfish Immunology

3.148

2017

RNA-Seq

20

Sea cucumber

Genome-wide analysis of gene expression profile in the respiratory tree of sea cucumber (Apostichopus japonicus) in response to hypoxia conditions

Journal of the Marine Biological Association of the United Kingdom

1.038

2017

RNA-Seq

21

human

FH535 Inhibits Proliferation and Motility of Colon Cancer Cells by Targeting Wnt/β-catenin Signaling Pathway

Journal of Cancer

2.916

2017

RNA-Seq

22

Mouse

Data Descriptor: RNA sequencing analysis of activated macrophages treated with the anti-HIV ABX464 in intestinal inflammation

Scientific Data

4.836

2017

RNA-Seq

23

Mouse

Orally Administrated Bakers Yeast beta-Glucan Promotes Glucose and Lipid Homeostasis in the Livers of ob/ob Mice

Journal of Agricultural and Food Chemistry

3.154

2017

RNA-Seq

24

Bradysia odoriphaga

Using Next-Generation Sequencing to Detect Differential Expression Genes in Bradysia odoriphaga after Exposure to Insecticides

International Journal of Molecular Sciences

3.226

2017

RNA-Seq

25

Antler cup coral

Systemic response of the stony coral Pocillopora damicornis against acute cadmium stress

Aquatic Toxicology

4.129

2017

RNA-Seq

26

Mouse

Characteristics of NK cells from leukemic microenvironment in MLL-AF9 induced acute myeloid leukemia

Molecular Immunology

3.236

2017

RNA-Seq

27

Sea cucumber

Differential gene expression in the intestine of sea cucumber (Apostichopus japonicus) under low and high salinity conditions

Comparative Biochemistry and Physiology D-Genomics & Proteomics

2.857

2017

RNA-Seq

28

Human cell line

Dual inhibition of DNMTs and EZH2 can overcome both intrinsic and acquired resistance of myeloma cells to IMiDs in a cereblonindependent manner

Molecular oncology

5.314

2017

RNA-seq

29

Human leukemia

Heterogeneous effects of M-CSF isoforms on the progression of MLL-AF9 leukemia

Immunology and cell biology

4.557

2017

RNA-seq

30

Ramie

Gene expression profiling of ramie roots during hydroponic induction and adaption to aquatic environment

Genomics Data

2.801

2017

RNA-Seq

31

human

Direct inhibition of ACTN4 by ellagic acid limits breast cancer metastasis via regulation of β-catenin stabilization in cancer stem cells

Journal of Experimental & Clinical Cancer Research

5.189

2017

RNA-Seq

32

Penicillium

Identification of differentially expressed genes involved in spore germination of Penicillium expansum by comparative transcriptome and proteome approaches

MicrobiologyOpen

2.747

2017

RNA-Seq

33

Pancreatic ductal adenocarcinoma

High expression of diffuse panbronchiolitis critical region 1 gene promotes cell proliferation, migration and invasion in pancreatic ductal adenocarcinoma

Biochemical and Biophysical Research Communications

2.466

2017

RNA-Seq

34

human

Probing impaired neurogenesis in human brain organoids exposed to alcohol

Integrative Biology

3.252

2017

RNA-Seq

35

human

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

GigaScience

7.267

2017

metagenome

36

Salt grass

Transcriptome sequencing and comparative analysis of differentially-expressed isoforms in the roots of Halogeton glomeratus under salt stress

Gene

2.415

2017

RNA-Seq

37

Green carp

Transcriptomic analysis reveals transgenerational effect of hypoxia on the neural control of testicular functions

Aquatic Toxicology

4.129

2017

RNA-Seq

38

Mouse

Effects of In Utero PFOS Exposure on Transcriptome, Lipidome and Function of Mouse Testis

Environmental Science & Technology

6.198

2017

RNA-Seq

39

human

Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing

PLOS ONE

3.057

2018

WGS

40

Snail&oyster

Conserved and ubiquitous expression of piRNAs and PIWI genes in mollusks antedates the origin of somatic PIWI/piRNA expression to the root of bilaterians

bioRxiv

2018

Small RNA

41

Arabidopsis thaliana

Phytochrome A Negatively Regulates the Shade Avoidance Response by Increasing Auxin/Indole Acidic Acid Protein Stability

Developmental Cell

9.174

2018

RNA-Seq

42

watermelon

Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon

PLOS ONE

3.057

2018

RNA-Seq

43

Artemisia annua

A novel HD-ZIP IV/MIXTA complex promotes glandular trichome initiation and cuticle development in Artemisia annua

New Phytologist

7.33

2018

RNA-Seq

44

human

A novel mutation in PRPF31, causative of autosomal dominant retinitis pigmentosa, using the BGISEQ-500 sequencer

International journal of ophthalmology

1.1

2018

WES

45

Rat

Preinduction with bone morphogenetic protein-2 enhances cardiomyogenic differentiation of c-kit+ mesenchymal stem cells and repair of infarcted myocardium

International Journal of Cardiology

6.189

2018

RNA-seq

46

Arabidopsis thaliana

The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides

Journal of Experimental Botany

5.83

2018

RNA-seq

47

human

An integrated biomanufacturing platform for the large-scale expansion and neuronal differentiation of human pluripotent stem cell-derived neural progenitor cells"

Acta Biomaterialia

6.319

2018

RNA-seq

48

Mouse

Cambogin suppresses dextran sulphate sodiuminduced colitis by enhancing Treg cell stability and function

British journal of pharmacology

5.49

2018

RNA-seq

49

Human cell line

FBXL10 contributes to the development of diffuse large B-cell lymphoma by epigenetically enhancing ERK1/2 signaling pathway

Cell death & disease

5.965

2018

RNA-seq

50

Arabidopsis thaliana

Arabidopsis thaliana ACS8 plays a crucial role in the early biosynthesis of ethylene elicited by Cu2+ ions

JOURNAL OF CELL SCIENCE

4.431

2018

RNA-seq

51

Mouse

Dual extra-retinal origins of microglia in the model of retinal microglia repopulation

Cell Discovery

2018

RNA-Seq

52

human

Overcoming erlotinib resistance in EGFR mutation-positive lung adenocarcinomas through repression of phosphoglycerate dehydrogenase

Theranostics

8.766

2018

RNA-Seq

53

Pea

A small set of differentially expressed genes was associated with two color morphs in natural populations of the pea aphid Acyrthosiphon pisum

Gene

2.415

2018

RNA-Seq

54

human

Selenite and methylseleninic acid epigenetically affects distinct gene sets in myeloid leukemia: A genome wide epigenetic analysis

Free Radical Biology and Medicine

5.606

2018

RNA-Seq

55

Mouse

Repopulated microglia are solely derived from the proliferation of residual microglia after acute depletion

Nature Neuroscience

17.839

2018

RNA-Seq

56

metagenome

A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses

Microbiome

8.496

2018

metagenome

57

tomato

Transcriptome resequencing analysis of the responses of Ty5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars

PeerJ

2.17

2018

RNA-seq

58

metagenome

Efficacy and safety of faecal microbiota transplantation in patients with psoriatic arthritis: protocol for a 6-month, double-blind, randomised, placebo-controlled trial

BMJ OPEN

2.369

2018

metagenome

59

Human cell line

Autophagy mediates glucose starvation-induced glioblastoma cell quiescence and chemoresistance through coordinating cell metabolism, cell cycle, and survival

Cell death & disease

5.965

2018

RNA-seq

60

Mouse

KRAB-type zinc-finger proteins PITA and PISA specifically regulate p53-dependent glycolysis and mitochondrial respiration

Cell research

15.606

2018

RNA-seq

61

Mouse

The LIS1/NDE1 Complex Is Essential for FGF Signaling by Regulating FGF Receptor Intracellular Trafficking

Cell Reports

8.282

2018

RNA-Seq

62

plant

A guide to sequence your favorite plant genomes

Applications in plant sciences

1.49

2018

Review

63

Human gastric cancer

The lncRNA MACC1-AS1 promotes gastric cancer cell metabolic plasticity via AMPK/Lin28 mediated mRNA stability of MACC1

Molecular Cancer

6.204

2018

RNA-seq

64

Rhizopus

Comparative genome-wide analysis of extracellular small RNAs from the mucormycosis pathogen Rhizopus delemar

Scientific Reports

4.259

2018

Small RNA

65

Thyroid cancer

TBX3 promotes proliferation of papillary thyroid carcinoma cells through facilitating PRC2-mediated p57KIP2 repression

Oncogene

7.519

2018

RNA-seq

66

Gastric cancer

Silkworm Pupa Protein Hydrolysate Induces Mitochondria-Dependent Apoptosis and S Phase Cell Cycle Arrest in Human Gastric Cancer SGC-7901 Cells

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

3.226

2018

RNA-seq

67

Arabidopsis thaliana

Hydrogen peroxide positively regulates brassinosteroid signaling through oxidation of the BRASSINAZOLE-RESISTANT1 transcription factor

Nature Communications

12.124

2018

RNA-seq

68

Human cell line

Small molecules capable of activating DNA methylationrepressed genes targeted by the p38 mitogen-activated protein kinase pathway

Journal of Biological Chemistry

4.125

2018

RNA-seq

69

Mouse

PAF-Myc-Controlled Cell Stemness Is Required for Intestinal Regeneration and Tumorigenesis

Developmental cell

9.174

2018

RNA-seq

70

leukemia

Leukemia cell-derived microvesicles induce T cell exhaustion via miRNA delivery

OncoImmunology

7.719

2018

RNA-seq

71

Saccharomyces cerevisiae

RNA-Seq analysis of global transcriptomic changes suggests a roles for the MAPK pathway and carbon metabolism in cell wall maintenance in a Saccharomyces cerevisiae FKS1 mutant

Biochemical and Biophysical Research Communications

2.466

2018

Transcriptome Sequencing

72

kava

The biosynthetic origin of psychoactive kavalactones in kava

bioRxiv

2018

Transcriptome Sequencing

73

Listeria

Identification and Characterization of als Genes Involved in D-Allose Metabolism in Lineage II Strain of Listeria monocytogenes

Frontiers in Microbiology

4.076

2018

RNA-seq

74

Cupriavidus

In Situ Lignin Bioconversion Promotes Complete Carbohydrate Conversion of Rice Straw by Cupriavidus basilensis B-8

ACS Sustainable Chemistry & Engineering

5.95

2018

RNA-seq

75

Rat

Cranial Irradiation Induces Hypothalamic Injury and Late-Onset Metabolic Disturbances in Juvenile Female Rats

DEVELOPMENTAL NEUROSCIENCE

3.03

2018

RNA-seq

76

human

Anti?fbrogenic Potential of Mesenchymal Stromal Cells in Treating Fibrosis in Crohns Disease

Digestive Diseases and Sciences

2.875

2018

RNA-seq

77

human

Quality Control of Next-generation Sequencing-based In vitro Diagnostic Test for Onco-relevant Mutations Using Multiplex Reference Materials in Plasma

Journal of Cancer

2.916

2018

Review

78

psoriasis

An Interleukin-25-Mediated Autoregulatory Circuit in Keratinocytes Plays a Pivotal Role in Psoriatic Skin Inflammation

Immunity

22.845

2018

RNA-seq

79

Human cell line

Roles of the CSE1L-mediated nuclear import pathway in epigenetic silencing

PNAS

9.661

2018

RNA-seq

80

Wheat rhizosphere

The Catabolite Repressor/Activator Cra Is a Bridge Connecting Carbon Metabolism and Host Colonization in the Plant Drought Resistance-Promoting Bacterium Pantoea alhagi LTYR-11Z

Applied and Environmental Microbiology

3.807

2018

RNA-seq

81

human

Efficient and unique co-barcoding of second-generation sequencing reads from long DNA molecules enabling cost effective and accurate sequencing, haplotyping, and de novo assembly

GENOME RESEARCH

11.922

2019

stLFR

82

Corn worm

Transcriptome profiling reveals differential gene expression of detoxification enzymes in Sitophilus zeamais responding to terpinen-4-ol fumigation

Pesticide Biochemistry and Physiology

2.59

2018

Transcriptome Sequencing

83

human

Identification of a mutL?homolog 1 mutation via whole?exome sequencing in a Chinese family with Gardner syndrome

Molecular Medicine Reports

1.692

2018

WES

84

E.coli

Differential gene expression in Escherichia coli during aerosolization from liquid suspension

Applied Microbiology and Biotechnology

3.42

2018

RNA-seq

85

Rat intestine

A gene catalogue of the Sprague-Dawley rat gut metagenome

GigaScience

7.267

2018

metagenome

86

Dracaena cambodiana

Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered Vulnerable in Southeast Asia

Mitochondrial DNA Part B

0.488

2018

plastome Sequencing

87

Human exosomes

Variants in EXOSC9 Disrupt the RNA Exosome and Result in Cerebellar Atrophy with Spinal Motor Neuronopathy

The American Journal of Human Genetics

9.025

2018

RNA-seq

88

Oyster

The Molecular Mechanism Underlying Pro-apoptotic Role of Hemocytes Specific Transcriptional Factor Lhx9 in Crassostrea hongkongensis

Frontiers in Physiology

4.134

2018

RNA-seq

89

Arabidopsis thaliana

Overexpression of VaWRKY14 increases drought tolerance in Arabidopsis by modulating the expression of stress-related genes

Plant Cell Reports

2.869

2018

RNA-seq

90

Salt mustard

Compositional and transcriptomic analysis associated with cuticle lipid production on rosette and inflorescence stem leaves in the extremophyte Thellungiella salsuginea

physiologia plantarum

3.3

2018

RNA-seq

91

yeast

Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods

Nature Communications

12.124

2018

WGS

92

Mouse

Global expression profiling and pathway analysis of mouse mammary tumor reveals strain and stage specific dysregulated pathways in breast cancer progression

Cell Cycle

3.53

2018

RNA-seq

93

human

STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection

Nature Communications

12.124

2018

RNA-seq

94

Rice

DDM1 represses noncoding RNA expression and RNA-directed DNA methylation in heterochromatin

Plant Physiology

6.456

2018

Small RNA

95

Rhesus monkey

Genetic screening and multipotency in rhesus monkey haploid neural progenitor cells

Development

5.843

2018

RNA-seq

96

Human cleft lip

A novel PTCH1 mutation underlies nonsyndromic cleft lip and/or palate in a Han Chinese family

oral diseases

2.01

2018

WES

97

Sogatella furcifera

Comparative transcriptome analysis of Sogatella furcifera (Horváth) exposed to different insecticides

Scientific Reports

4.259

2018

Transcriptome Sequencing

98

Infective endocarditis

Identification of pathogens in culture-negative infective endocarditis with metagenomic analysis

Annals of Clinical Microbiology and Antimicrobials

3.155

2018

metagenome

99

human

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

BMC Genomics

3.73

2018

WGS&PCR-Free

100

Human cell line

Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy

Journal of Pharmacology and Experimental Therapeutics

3.867

2018

RNA-seq&Small RNA

101

Cynoglossus semilaevis

Transcriptome profiling of immune-responsive genes in the intestine of Cynoglossus semilaevis Günther challenged with Shewanella algae

Fish & Shellfish Immunology

3.148

2018

RNA-seq

102

tomato

Expression of grape ACS1 in tomato decreases ethylene and alters the balance between auxin and ethylene during shoot and root formation

Journal of Plant Physiology

3.121

2018

RNA-seq

103

Ovarian cancer

C/EBPβ enhances platinum resistance of ovarian cancer cells by reprogramming H3K79 methylation

Nature Communications

12.124

2018

WES

104

Mycobacterium

Diagnosis of local hepatic tuberculosis through next-generation sequencing: Smarter, faster and better

Clinics and Research in Hepatology and Gastroenterology

2.623

2018

Pathogen detection

105

cucumber

Differential Gene Expression Caused by the F and M Loci Provides Insight Into Ethylene-Mediated Female Flower Differentiation in Cucumber

Front. Plant Sci.

3.678

2018

RNA-seq

106

Spontaneous preterm birth

Whole exome sequencing reveals HSPA1L as a genetic risk factor for spontaneous preterm birth

PLOS.Genetics

5.54

2018

WES

107

Parasitic wasp

Parasitic insect-derived miRNAs modulate host development

Nature Communications

12.124

2018

Small RNA

108

human

The epigenetic modifier PBRM1 restricts the basal activity of the innate immune system by repressing retinoic acid-inducible gene-I-like receptor signalling and is a potential prognostic biomarker for colon cancer.

J Pathol

6.253

2018

RNA-seq

109

Human cell line

Mutually exclusive acetylation and ubiquitylation of the splicing factor SRSF5 control tumor growth

Nature Communications

12.124

2018

RNA-Seq

110

Human interstitial cells

Differential and Interactive Effects of Substrate Topography and Chemistry on Human Mesenchymal Stem Cell Gene Expression

International Journal of Molecular Sciences.

3.687

2018

RNA-Seq

111

Arabidopsis thaliana

Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants

Plant Methods

4.269

2018

RNA-seq

112

Rice

Modulating plant growthmetabolism coordination for sustainable agriculture

Nature

41.577

2018

RNA-Seq&ChIP-Seq

113

Mouse

Menin Deficiency Leads to Depressive-like Behaviors in Mice by Modulating Astrocyte-Mediated Neuroinflammation

Neuron

14.318

2018

RNA-Seq

114

human

3 Branch ligation: a novel method to ligate non-complementary DNA to recessed or internal 30OH ends in DNA or RNA

DNA RES

5.404

2018

stLFR

115

human

Validation of combinatorial probeanchor ligation-based sequencing as non-invasive prenatal test for trisomy at a central laboratory

Ultrasound in Obstetrics & Gynecology

4.71

2017

NIFTY

116

plant

10KP: A Phylodiverse Genome Sequencing Plan

GigaScience

7.267

2018

COMMENTARY

117

fish

Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression

GigaScience

7.267

2018

Hi-C library

118

tomato

Comparative Transcriptome Profiling of Two Tomato Genotypes in Response to Potassium-Deficiency Stress

International Journal of Molecular Sciences

3.687

2018

RNA-Seq

119

human

The microRNA-29/PGC1α regulatory axis is critical for metabolic control of cardiac function

PLOS ONE

3.057

2018

Small RNA

120

human

The metagenome of the female upper reproductive tract

GigaScience

7.267

2018

metagenome

121

virus

clinical application of respiratory virus detection by metagenomic next generation sequencing

Chinese Journal of Nosocomiology(china)

2018

metagenome

122

Alfalfa

Multiple Regulatory Networks Are Activated during Cold Stress in Medicago sativa L

International Journal of Molecular Sciences

3.687

2018

RNA-Seq

123

Rat

Hippocampal gene expression profiling in a rat model of functional constipation reveals abnormal expression genes associated with cognitive function

Neuroscience Letters

2.18

2018

RNA-Seq

124

human

Advanced Whole-Genome Sequencing and Analysis of Fetal Genomes from Amniotic Fluid

Clinical Chemistry

8.636

2018

PGS

125

human

Isolation and whole genome sequencing of fetal cells from maternal blood towards the ultimate noninvasive prenatal testing

PRENATAL DIAGNOSIS

2.523

2017

PGS

126

human

Multiplex Cell-Free DNA Reference Materials for Quality Control of Next-Generation Sequencing-Based In Vitro Diagnostic Tests of Colorectal Cancer Tolerance

Journal of Cancer

2.916

2018

cfDNA

127

Mouse

Glucocorticoid receptor in stromal cells is essential for glucocorticoid-mediated suppression of inflammation in arthritis

Annals of the Rheumatic Diseases

12.38

2018

RNA-Seq

128

Human cell line

The epigenetic modifer PBRM1 restricts the basal activity of the innate immune system by repressing retinoic acid-inducible gene-I-like receptor signalling and is a potential prognostic biomarker for colon cancer

Journal of Pathology

6.253

2018

RNA-Seq

129

Mouse

Polysaccharides extracted from Phellinus linteus ameliorate high-fat high-fructose diet induced insulin resistance in mice

Carbohydrate Polymers

5.158

2018

RNA-Seq

130

Zebrafish

Transcriptome analysis reveals functional roles of nacreous protein N16 in prednisolone-induced osteoporotic zebrafish

International Journal of Biological Macromolecules

3.909

2018

RNA-Seq

131

peanut

Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

BMC genomics

3.73

2018

RNA-Seq

132

Alfalfa

Comparative Transcriptomic and Physiological Analyses of Medicago sativa L. Indicates that Multiple Regulatory Networks Are Activated during Continuous ABA Treatment

Int J Mol Sci.

3.687

2018

RNA-Seq

133

Oyster

Analysis of in situ Transcriptomes Reveals Divergent Adaptive Response to Hyper- and Hypo-Salinity in the Hong Kong Oyster, Crassostrea hongkongensis

Front. Physiol

3.394

2018

RNA-Seq

134

Heortia vitessoides

Candidate olfactory genes identified in Heortia vitessoides(Lepidoptera: Crambidae) by antennal transcriptome analysis

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics

2.913

2018

Transcriptome Sequencing

135

barley

Transcriptomic comparison of two barley genotypes differing in arsenic tolerance exposed to arsenate and phosphate treatments

Plant Physiology and Biochemistry

2.718

2018

RNA-Seq

136

alveolar macrophages

Transcriptome of porcine alveolar macrophages activated by interferon-gamma and lipopolysaccharide

Biochemical and Biophysical Research Communications

2.559

2018

RNA-Seq

137

Salt grass

Comparative transcriptome analysis of genes involved in Na+ transport in the leaves of halophyte Halogeton glomeratus

Gene

2.498

2018

RNA-seq

138

duck

RNA-Seq analysis of duck embryo fibroblast cell gene expression during the early stage of egg drop syndrome virus infection

Poultry Science

2.216

2018

RNA-Seq

139

Heortia vitessoides

De novo assembly and identification of antennal transcriptome reveals an olfactory system in Heortia vitessoides (Lepidoptera: Crambidae)

PeerJ

2.17

2017

Transcriptome Sequencing

140

Jujube

Combination of iTRAQ proteomics and RNA-seq transcriptomics reveals jasmonate-related-metabolisms central regulation during the process of Jujube witches broom recovery by tetracycline treatment

Scientia Horticulturae

1.76

2018

RNA-seq

141

human

The application of NIPT using combinatorial probe-anchor synthesis to identify sex chromosomal aneuploidies (SCAs) in a cohort of 570 pregnancies.

Mol Cytogenet.

1.167

2018

NIFTY

142

Cell line

A new massively parallel nanoball sequencing platform for whole exome research

BMC Bioinformatics

2.448

2019

WES

143

Mouse embryo Stem cells&human K562 cells

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

GENOME BIOLOGY

13.214

2019

scRNA-Seq

144

Purple cabbage, kale

Maintenance of grafting-induced epigenetic variations in the asexual progeny of Brassica oleracea and B juncea chimera

Plant J

5.97

2018

Small RNA

145

Exosomes

Exosomes derived from preadipocytes improve osteogenic differentiation, potentially via reduced miR?223 expression

Molecular Medicine Reports

1.692

2018

RNA-Seq

146

Caenorhabditis elegans

A Persistence Detector for Metabolic Network Rewiring in an Animal

CELL REP

8.282

2019

RNA-Seq

147

human

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos

Nature Communications

12.124

2019

ATAC-seq&LiCAT-seq

148

Gram-positive bacteria

Functional analysis of Leifsonia xyli subsp xyli membrane protein gene Lxx18460 (anti-sigma K)

BMC Microbiol

2.644

2019

RNA-Seq

149

Celastrus angulatus maxim

De novo leaf and root transcriptome analysis to explore biosynthetic pathway of Celangulin V in Celastrus angulatus maxim

BMC GENOMICS

3.729

2019

RNA-Seq

150

human

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

Nature Communications

12.124

2019

scCAT-seq

151

Nematode

The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans

PLOS GENET

6.1

2019

RNA-Seq&ChIP-seq

152

Mouse

Organic cation transporter 3 (Oct3) is a distinct catecholamines clearance route in adipocytes mediating the beiging of white adipose tissue

PLOS BIOL

9.797

2019

RNA-Seq

153

Rice

The basic helixloophelix transcription factor, OsPIL15, regulates grain size via directly targeting a purine permease gene OsPUP7 in rice

PLANT BIOTECHNOL J

7.443

2019

RNA-Seq

154

Brassica

Chromosome level comparative analysis of Brassica genomes

PLANT MOL BIOL

3.356

2019

Hi-C library

155

human

CINP is a novel cofactor of KLF5 required for its role in the promotion of cell proliferation, survival and tumor growth

INT J CANCER

6.513

2019

RNA-Seq

156

human

Knockdown of KDM2A inhibits proliferation associated with TGF-β expression in HEK293T cell

MOL CELL BIOL

4.398

2019

RNA-Seq

157

human

Toxoplasma gondii ROP17 inhibits the innate immune response of HEK293T cells to promote its survival

PARASITOL RES

2.329

2019

RNA-Seq

158

tomato

Overexpression of the KNOX gene Tkn4 affects pollen development and confers sensitivity to gibberellin and auxin in tomato

J PLANT BIOL

1.437

2019

RNA-Seq

159

tomato

A tomato Bbox protein SlBBX20 modulates carotenoid biosynthesis by directly activating PHYTOENE SYNTHASE 1, and is targeted for 26S proteasomemediated degradation

New Phytologist

7.33

2019

RNA-Seq

160

human

Frequency of mutations in 21 hereditary breast and ovarian cancer susceptibility genes among high-risk Chinese individuals

bioRxiv

2019

capture

161

Rice

Expression of Maize MADS Transcription Factor ZmES22 Negatively Modulates Starch Accumulation in Rice Endosperm

INT J MOL SCI

3.226

2019

RNA-Seq

162

human

MicroRNA profiling from dried blood samples

Critical Reviews in Clinical Laboratory Sciences

6.481

2019

Small RNA

163

Arabidopsis thaliana

Functional analysis for domains of maize PPR protein EMP5 in RNA editing and plant development in Arabidopsis

PLANT GROWTH REGUL

2.646

2019

RNA-Seq

164

human

Human epidermal growth factor receptor 2 amplification as a biomarker for treatment in patients with lymph node?metastatic penoscrotal extramammary Paget's disease

Oncology Letters

1.664

2019

WGS

165

Grouper

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

Molecular Ecology Resources

7.059

2019

RNA-Seq&ATAC-seq

166

Amphioxus

Genome-wide transcriptional response of microRNAs to the benzo(a)pyrene stresD168:D178s in amphioxus Branchiostoma belcheri

CHEMOSPHERE

4.208

2019

Small RNA

167

Zebrafish

Microcystin-LR exposure induced nephrotoxicity by triggering apoptosis in female zebrafish

CHEMOSPHERE

4.208

2019

RNA-Seq

168

human

Genomic sequencing and editing revealed the GRM8 signaling pathway as potential therapeutic targets of squamous cell lung cancer

CANCER LETT

6.375

2019

WGS&WES

169

human

Nonobese subjects of Bacteroides and Prevotella enterotypes responded differentially to calorie restriction intervention

bioRxiv

2019

metagenome

170

Alfalfa

Full-length transcript sequencing and comparative transcriptomic analysis to evaluate the contribution of osmotic and ionic stress components towards salinity tolerance in the roots of cultivated alfalfa (Medicago sativa L)

BMC Plant Biology

3.964

2019

RNA-Seq

171

human

Genome-wide identification of protein binding sites on RNAs in mammalian cells

Biochemical and Biophysical Research Communications

2.466

2019

RPBS-Cap

172

Amphioxus

Genome-wide gene expression analysis reveals novel insights into the response to nitrite stress in gills of Branchiostoma belcheri

CHEMOSPHERE

4.208

2019

RNA-Seq

173

Mouse

Loss or oncogenic mutation of DROSHA impairs kidney development and function, but is not sufficient for Wilms tumor formation

INT J CANCER

6.513

2018

RNA-Seq

174

Pathogen

Pathogens in Patients with Granulomatous lobular mastitis

INT J INFECT DIS

2.532

2019

Pathogen detection

175

human

The identification of a transthyretin variant p.D38G in a Chinese family with early-onset leptomeningeal amyloidosis

Journal of Neurology

3.783

2019

WES

176

bacterial

MALDI-TOF Characterization of Protein Expression Mutation During Morphological Changes of Bacteria Under the Impact of Antibiotics

ANAL CHEM

6.32

2019

RNA-Seq

177

Herpes Simplex Viruses

Identification of Putative UL54 (ICP27) Transcription Regulatory Sequences Binding to Oct-1, v-Myb, Pax-6 and Hairy in Herpes Simplex Viruses

Journal of Cancer

2.916

2019

Pathogen detection

178

Tropical fruit of Indonesia

Datasets for genome assembly of six underutilized Indonesian fruits

Data in Brief

2019

WGS

179

Brassica

The complete plastid genomes of four species from Brassicales

MITOCHONDR DNA part B

0.488

2019

plastome Sequencing

180

insect

Candidate olfactory genes identified in Heortia vitessoides (Lepidoptera: Crambidae) by antennal transcriptome analysis

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics

2.857

2019

RNA-seq

181

virus

Genome comparison of African swine fever virus China/2018/AnhuiXCGQ strain and related European p72 Genotype II strains

TRANSBOUND EMERG DIS

3.585

2019

Pathogen detection

182

Sea worm family

Complete mitogenome of a Baltic Sea specimen of the non-indigenous polychaete Marenzelleria neglecta

MITOCHONDR DNA part B

0.488

2019

WGS

183

metagenome

Metagenomic next-generation sequencing contribution in identifying prosthetic joint infection due to Parvimonas micra: a case report

journal of Bone and Joint Infection

2019

Pathogen detection

184

White whale

The first chromosomelevel genome for a marine mammal as a resource to study ecology and evolution

Molecular Ecology Resources

7.332

2019

WGS

185

metagenome

The vagino-cervical microbiome as a woman's life history

bioRxiv

2019

metagenome

186

Danionella translucida

Hybrid genome assembly and annotation of Danionella translucida

bioRxiv

2019

Transcriptome Sequencing

187

corn

Molecular Mechanisms Underlying Increase in Lysine Content of Waxy Maize through the Introgression of the opaque2 Allele

INT J MOL SCI

3.226

2019

RNA-Seq

188

penguin

Mitogenomes uncover extinct penguin taxa and reveal island formation as a key driver of speciation

Molecular Biology and Evolution

6.202

2019

WGS

189

metagenome

The biodiversity Composition of Microbiome in Ovarian Carcinoma Patients

Scientific Reports

4.259

2019

RNA-Seq

190

apple

Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

BMC genomics

3.73

2019

RNA-Seq

191

tomato

SlMYB75, an MYB-type transcription factor,promotes anthocyanin accumulation and enhances volatile aroma production in tomato fruits

Horticulture Research

3.6

2019

RNA-Seq

192

Mouse

The effects of perfluorooctanoate on high fat diet induced non-alcoholic fatty liver disease in mice

Toxicology

3.582

2019

RNA-Seq

193

Molecular digitization of a botanical garden: high-depth whole genome sequencing of 689 vascular plant species from the Ruili Botanical Garden

GigaScience

7.267

2019

WGS

194

American ginseng

Characterization of the complete chloroplast genome of American ginseng, Panax quinquefolius L.

Mitochondrial DNA Part B

0.488

2019

chloroplast Sequencing

195

Nanmu

Characterization of the complete chloroplast genome of the Phoebe zhennan S. Lee

Mitochondrial DNA Part B

0.488

2019

chloroplast Sequencing

196

eggplant

Comparative transcriptome analysis reveals K+ transporter gene contributing to salt tolerance in eggplant

BMC Plant Biology

3.964

2019

RNA-Seq

197

Mouse

Eradication of glioblastoma by immuno-virotherapy with a retargeted oncolytic HSV in a preclinical model

Oncogene

7.519

2019

RNA-Seq

198

Bradysia odoriphaga

Genome-wide analysis of developmental stage-specific transcriptome in Bradysia odoriphaga

Comparative Biochemistry and Physiology D-Genomics & Proteomics

2.857

2019

RNA-Seq

199

human

A Novel Heterozygous Mutation of the COL4A3 Gene Causes a Peculiar Phenotype without Hematuria and Renal Function Impairment in a Chinese Family

DISEASE MARKERS

2.348

2019

WES

200

human

Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA sequencing

bioRxiv

2019

scRNA-Seq

201

Rat

Anti-senescence role of heterozygous fumarate hydratase gene knockout in rat lung fibroblasts in vitro

Aging

5.179

2019

RNA-Seq

202

Lactobacillus

Two Strains of Lactobacilli Effectively Decrease the Colonization of VRE in a Mouse Model

Frontiers in cellular and Infection Microbiology

3.52

2019

RNA-Seq

203

dog

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival

bioRxiv

2019

RNA-Seq

204

human

Diminished OPA1 expression and impaired mitochondrial morphology and homeostasis in Aprataxin-deficient cells

Nucleic Acids Research

10.162

2019

RNA-Seq

205

human

Specific Decrease in B-Cell-Derived Extracellular Vesicles Enhances Post-Chemotherapeutic CD8+ T Cell Responses

Immunity

22.845

2019

RNA-Seq

206

Mouse

Ex Vivo Hepatocyte Reprograming Promotes HomologyDirected DNA Repair to Correct Metabolic Disease in Mice After Transplantation

hepatology communications

2019

RNA-Seq

207

Rodents

Hepatic IRF6 alleviates liver steatosis and metabolic disorder by transcriptionally suppressing PPARγ

hepatology

13.246

2019

RNA-Seq&ChIP-Seq

208

Neisseria gonorrhoeae

Identification and expression analysis of ceftriaxone resistance-related genes in Neisseria gonorrhoeae integrating RNA-Seq data and qRT-PCR validation

Journal of Global Antimicrobial Resistance

1.276

2019

RNA-Seq

209

human

Identification of a Heterozygous Mutation in the TGFBI Gene in a Hui-Chinese Family with Corneal Dystrophy

Journal of Ophthalmology

1.712

2019

RNA-Seq

210

Rice

OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes

rice

3.739

2019

RNA-Seq

211

Arabidopsis thaliana

The R2R3-MYB transcription factor MYB49 regulates cadmium accumulation

Plant physiology

6.456

2019

RNA-Seq

212

oilseed rape

Transcriptome analysis of the irregular shape of shoot apical meristem in dt (dou tou) mutant of Brassica napus L.

Molecular Breeding

2.465

2019

RNA-Seq

213

potato

Sequencing and characterization the complete chloroplast genome of the potato, Solanum tuberosum L.

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

214

human

Precisely controlling endogenous protein dosage in hPSCs and derivatives to model FOXG1 syndrome

Nature Communications

12.124

2019

RNA-Seq

215

Mouse

Transcriptome Profile in Hippocampus During Acute Inflammatory Response to Surgery: Toward Early Stage of PND

Frontiers in Immunology

6.429

2019

RNA-Seq

216

Dandelion

Dandelion polysaccharides exert anticancer effect on Hepatocellular carcinoma by inhibiting PI3K/AKT/mTOR pathway and enhancing immune response

Journal of Functional Foods

3.144

2019

RNA-Seq

217

peach

A single nucleotide mutation in GID1c disrupts its interaction with DELLA1 and causes a GAinsensitive dwarf phenotype in peach

PLANT BIOTECHNOLOGY JOURNAL

7.443

2019

RNA-Seq

218

Nude mouse

RREB1-induced upregulation of the lncRNA AGAP2-AS1 regulates the proliferation and migration of pancreatic cancer partly through suppressing ANKRD1 and ANGPTL4

Cell Death & Disease

5.965

2019

RNA-Seq

219

human

CCR7 Chemokine Receptor-Inducible lnc-Dpf3 Restrains Dendritic Cell Migration by Inhibiting HIF-1α-Mediated Glycolysis

Immunity

22.845

2019

RNA-Seq

220

Mouse

Intestinal transcriptional profling reveals fava bean-induced immune response in DBA/1 mice

Biological Research

1.692

2019

RNA-Seq

221

Anabas testudineus

Transcriptomic analysis of Anabas testudineus and its defensive mechanisms in response to persistent organic pollutants exposure

SCIENCE OF THE TOTAL ENVIRONMENT

4.9

2019

RNA-Seq

222

Yak

Nutritional Interventions Improved Rumen Functions and Promoted Compensatory Growth of Growth-Retarded Yaks as Revealed by Integrated Transcripts and Microbiome Analyses

Frontiers in microbiology

4.076

2019

RNA-Seq

223

human

The proinflammatory cytokine TNF-α induces DNA demethylationdependent and independent activation of interleukin-32 expression

Journal of Biological Chemistry

4.125

2019

RNA-Seq

224

Diatom

Complete chloroplast genome of the diatom Skeletonema pseudocostatum from the Western Mediterranean coast of Algeria

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

225

human

COL1A2 p.Gly1066Val variant identified in a Han Chinese family with osteogenesis imperfecta type I

molecular genetics&genomics

2.979

2019

WES

226

human

Establishment of a human embryonic stem cell-based liver differentiation model for hepatotoxicity evaluations

Ecotoxicology and Environmental Safety

3.743

2019

RNA-Seq

227

mouse

Germline deletion of Cdyl causes teratozoospermia and progressive infertility in male mice

Cell Death & Disease

5.965

2019

RNA-seq

228

human

Novel GLI3 mutations in Chinese patients with non-syndromic post-axial polydactyly

CURRENT MOLECULAR MEDICINE

2.345

2019

WES

229

Horseshoe

RNA-Seq analysis of gene expression during the yellowing developmental process of fresh-cut Chinese water chestnuts

Scientia Horticulturae

1.624

2019

RNA-seq

230

fish

Hypoxia causes transgenerational impairment of ovarian development and hatching success in fish

ENVIRONMENTAL SCIENCE & TECHNOLOGY

6.198

2019

RNA-seq

231

human

Integrated lipidomics and transcriptomics characterization upon aging related changes of lipid species and pathways in human bone marrow mesenchymal stem cells

JOURNAL OF PROTEOME RESEARCH

4.268

2019

RNA-seq

232

mouse

Toxicity Induced by Zirconia Oxide Nanoparticles on Various Organs After Intravenous Administration in Rats

Journal of Biomedical Nanotechnology

4.521

2019

RNA-seq

233

human

Comparative analysis of novel MGISEQ-2000 sequencing platform vs Illumina HiSeq 2500 for whole-genome sequencing

bioRxiv

2019

WGS

234

human

Nucleoporin Seh1 Interacts with Olig2/Brd7 to Promote Oligodendrocyte Differentiation and Myelination

Neuron

14.318

2019

RNA-seq

235

human

Generation of Highly Biomimetic Quality Control Materials for Noninvasive Prenatal Testing Based on Enzymatic Digestion of Matched MotherChild Cell Lines

CLINICAL CHEMISTRY

8.008

2019

NIFTY

236

Salvia

Comparative transcriptomic analysis provides insights into the development of a Salvia splendens Ker-Gawler mutant, SX919M

PLoS One

2.806

2019

RNA-seq

237

mouse

Absence of GdX/UBL4A Protects against Inflammatory Diseases by Regulating NF-кB Signaling in Macrophages and Dendritic Cells

Theranostics

8.712

2019

RNA-seq

238

mouse

Hypoxic BMSC-derived exosomal miRNAs promote metastasis of lung cancer cells via STAT3-induced EMT

Molecular Cancer

6.204

2019

RNA-seq

239

Microalgae

Transcriptomic and lipidomic analysis of an EPA-containing Nannochloropsis sp. PJ12 in response to nitrogen deprivation

Scientific Reports

4.259

2019

RNA-seq

240

human

Collaborative ISL1/GATA3 interaction in controlling neuroblastoma oncogenic pathways overlapping with but distinct from MYCN

Theranostics

8.712

2019

RNA-seq

241

Arabidopsis thaliana

Comparative physiological and transcriptomic analyses reveal the toxic effects of ZnO nanoparticles on plant growth

ENVIRONMENTAL SCIENCE & TECHNOLOGY

6.198

2019

RNA-seq

242

Spider Mite

Identification of Saliva Proteins of the Spider Mite Tetranychus evansi by Transcriptome and LCMS/MS Analyses

PROTEOMICS

4.041

2018

RNA-seq

243

Mosquito

Mosquito Small RNA Responses to West Nile and Insect-Specific Virus Infections in Aedes and Culex Mosquito Cells

viruses

3.761

2019

Small RNA

244

Rose yellow mosaic virus

Complete genome sequence of a novel member of the family Potyviridae isolated from Phellodendron amurense Rupr. in Liaoning, China

ARCHIVES OF VIROLOGY

2.058

2019

Small RNA

245

mouse

An ATAC-seq atlas of chromatin accessibility in mouse tissues

Scientific Data

5.305

2019

ATAC-seq

246

metagenome

Life history recorded in the vagino-cervical microbiome

bioRxiv

2019

metagenome

247

human

MicroRNA signature of air pollution exposureinduced congenital defects

JOURNAL OF CELLULAR PHYSIOLOGY

4.08

2019

Small RNA

248

human

Decitabine shows synergistic effects with arsenic trioxide against myelodysplastic syndrome cells via endoplasmic reticulum stress-related apoptosis

Journal of Investigative Medicine

1.943

2019

RNA-seq

249

human

Panel-based NGS reveals disease-causing mutations in hearing loss patients using BGISEQ-500 platform

MEDICINE

1.803

2019

capture

250

human

Super-enhancers: novel target for pancreatic ductal adenocarcinoma

oncotarget

5.168

2019

RNA-Seq&ChIP-Seq

251

bacterial

An Osmoregulatory Mechanism Operating through OmpR and LrhA Controls the Motile-Sessile Switch in the Plant Growth-Promoting Bacterium Pantoea alhagi

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

3.807

2019

RNA-Seq

252

mouse

Metabolic Profiling of Tumors, Sera, and Skeletal Muscles from an Orthotopic Murine Model of Gastric Cancer Associated-Cachexia

JOURNAL OF PROTEOME RESEARCH

4.268

2019

RNA-Seq

253

Human cell line

Targeting super-enhancer-driven oncogenic transcription by CDK7 inhibition in anaplastic thyroid cancer

THYROID

5.515

2019

RNA-Seq&ChIP-Seq

254

Caenorhabditis elegans

Gene-level quantitative trait mapping in an expanded C. elegans multiparent experimental evolution panel

bioRxiv

2019

WGS

255

tomato

Characterization the complete chloroplast genome of the tomato (Solanum lycopersicum L.) from China

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

256

Pathogen

Highthroughput identification and diagnostics of pathogens and pests: Overview and practical recommendations

Molecular Ecology Resources

7.332

2018

Pathogen detection

257

porcine sapelovirus

Characterization and epidemiological survey of porcine sapelovirus in China

Veterinary Microbiology

2.628

2019

Pathogen detection

258

Salmonella enteritidis

Increased growth rate and amikacin resistance of Salmonella enteritidis after onemonth spaceflight on Chinas Shenzhou11 spacecraft

Microbiologyopen

2.747

2019

Pathogen detection

259

Fungus

Intercellular communication is required for trap formation in the nematode-trapping fungus Duddingtonia flagrans

PLOS.Genetics

5.54

2019

RNA-Seq

260

Human cell line

Next-Generation Sequencing Analysis of mRNA Profile in Cisplatin-Resistant Gastric Cancer Cell Line SGC7901

Med Sci Monit

1.585

2019

RNA-Seq

261

Verticillium dahliae

Genomewide Transcriptome Profiles Reveal How Bacillus subtilis Lipopeptides Inhibit Microsclerotia Formation in Verticillium dahliae

MOLECULAR PLANT-MICROBE INTERACTIONS

4.332

2019

RNA-Seq

262

Human cell line

Human UTP14a promotes angiogenesis through upregulating PDGFA expression in colorectal cancer

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

2.466

2019

RNA-Seq

263

Chlorella

The Complete Chloroplast Genome of Tetraselmis desikacharyi (Chlorodendrophyceae) and Phylogenetic Analysis

Mitochondrial DNA Part B

0.48

2019

chloroplast Sequencing

264

Flatworm

Complete mitogenome of the giant invasive hammerhead flatworm Bipalium kewense

MITOCHONDR DNA part B

0.488

2019

MtDNA sequencing

265

virus

The complete nucleotide sequence and genome organization of a novel virus of the order Tymovirales isolated from Prunus davidiana (Carr.) Franch. in Liaoning, China

Archives of Virology

2.058

2019

Small RNA

266

Monascus

A Comprehensive Analysis of the Small GTPases Ypt7 Involved in the Regulation of Fungal Development and Secondary Metabolism in Monascus ruber M7

Frontiers in Microbiology

4.076

2019

RNA-Seq

267

corn

Maize VIVIPAROUS1 Interacts with ABA INSENSITIVE5 to Regulate GALACTINOL SYNTHASE2 Expression Controlling Seed Raffinose Accumulation

Journal of Agricultural and Food Chemistry

3.154

2019

RNA-Seq

268

Human cell line

Exosome-Mediated Delivery of Inducible miR-423-5p Enhances Resistance of MRC-5 Cells to Rabies Virus Infection

International Journal of Molecular Sciences

3.226

2019

Small RNA

269

Human cell line

MicroRNA profiling of plasma exosomes from patients with ovarian cancer using high?throughput sequencing

Oncology Letters

1.664

2019

Small RNA

270

Zebrafish

Acute exposure to ustiloxin A affects growth and development of early life zebrafish, Danio rerio

Chemosphere

4.208

2019

RNA-Seq

271

Mouse

Identification of key genes, pathways, and miRNA/mRNA regulatory networks of CUMS-induced depression in nucleus accumbens by integrated bioinformatics analysis

Neuropsychiatric Disease and Treatment

2.198

2019

RNA-seq&Small RNA

272

metagenome

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

bioRxiv

2019

metagenome

273

human

Identifying a BRCA2 c.5722_5723del mutation in a Han-Chinese family with breast cancer

BIOSCIENCE REPORTS

2.906

2019

WES

274

Sorghum

Characterization of the complete chloroplast genome of the Chinese sorghum, Sorghum bicolor from China

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

275

Whale

The Marine Mammal Class II Major Histocompatibility Complex Organization

Frontiers in Immunology

6.429

2019

WGS

276

grass carp

Transcriptome analysis of rare minnow (Gobiocypris rarus) infected by the grass carp reovirus

Fish & Shellfish Immunology

3.185

2019

RNA-Seq

277

Human cell line

Irradiation-induced dynamic changes of gene signatures reveal gain of metastatic ability in nasopharyngeal carcinoma

American Journal of Cancer Research

3.998

2019

RNA-Seq

278

Cartilage fish

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

bioRxiv

2019

WGS&Hi-C library&RNA-Seq

279

human

Novel DPY19L2 variants in globozoospermic patients and the overcoming this male infertility

ASIAN JOURNAL OF ANDROLOGY

3.259

2019

WES

280

Mouse

Pharmacological and transcriptome profiling analyses of Fufang E'jiao Jiang during chemotherapy-induced myelosuppression in mice

Journal of Ethnopharmacology

3.115

2019

RNA-Seq

281

human

Whole genome sequencing reveals complexity in both HPV sequences present and HPV integrations in HPV-positive oropharyngeal squamous cell carcinomas

BMC Cancer

3.288

2019

WGS

282

Cattle

Genomic variants identified from whole-genome resequencing of indicine cattle breeds from Pakistan

Plos one

2.766

2019

WGS

283

frog

Integrated mRNA and miRNA expression profile analyses reveal the potential roles of sexbiased miRNAmRNA pairs in gonad tissues of the Chinese concaveeared torrent frog (Odorrana tormota)

JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

2.432

2019

RNA-seq&Small RNA

284

Arabidopsis thaliana

The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis

PLOS.Genetics

5.54

2019

RNA-Seq

285

Collembola

Developmental Expression and Evolution of Hexamerin and Hemocyanin from Folsomia candida (Collembola)

INSECT MOLECULAR BIOLOGY

2.492

2019

RNA-Seq

286

Mouse

Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism

Cell Reports

8.282

2019

RNA-Seq

287

human

Frizzled 2induced epithelialmesenchymal transition correlates with vasculogenic mimicry, stemness, and Hippo signaling in hepatocellular carcinoma

cancer science

4.372

2019

RNA-Seq

288

Streptococcus thermophilus

Study on high throughput sequencing genomic DNA extraction of streptococcus scarlet fever

South China Journal Of Preventive Medicine(china)

2019

Pathogen detection

289

broad bean

Identification and Characterization of Salt-Responsive MicroRNAs in Vicia faba by High-Throughput Sequencing

genes

3.191

2019

Small RNA

290

Human cell line

Ai-lncRNA EGOT enhancing autophagy sensitizes paclitaxel cytotoxicity via upregulation of ITPR1 expression by RNA-RNA and RNA-protein interactions in human cancer

Molecular Cancer

7.776

2019

ChIP-seq

291

human

Single cell RNA sequencing reveals cellular diversity of trisomy 21 retina

bioRxiv

2019

scRNA-Seq

292

human

Single cell RNA-seq reveals cellular diversity and developmental characteristics of human infant retina

bioRxiv

2019

scRNA-Seq

293

corn

Transcriptome Dynamics of Double Recessive Mutant, o2o2o16o16, Reveals the Transcriptional Mechanisms in the Increase of Its Lysine and Tryptophan Content in Maize

genes

3.191

2019

RNA-Seq

294

Human cell line

LFMD: a new likelihood-based method to detect low-frequency mutations without molecular tags

bioRxiv

2019

MtDNA sequencing

295

Mouse

YAP Aggravates Inflammatory Bowel Disease by Regulating M1/M2 Macrophage Polarization and Gut Microbial Homeostasis

Cell Reports

8.282

2019

RNA-Seq

296

Mouse

Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate

CELL RESEARCH

15.393

2019

RNA-Seq

297

Zebrafish

Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling in zebrafish

Nature Communications

12.124

2019

RNA-seq

298

Human cell line

Translation of the circular RNA circβ-catenin promotes liver cancer cell growth through activation of the Wnt pathway

Genome Biology

13.214

2019

RNA-seq

299

Monarch butterfly

Transcriptomics of monarch butterflies (Danaus plexippus) reveals strong differential gene expression in response to host plant toxicity, but weak response to parasite infection

bioRxiv

2019

RNA-seq

300

metagenome

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must

Frontiers in Microbiology

4.076

2019

metagenome

301

Soy

Integration of metabolome and transcriptome analyses highlights soybean roots responding to phosphorus deficiency by modulating phosphorylated metabolite processes

Plant Physiology and Biochemistry

2.718

2019

RNA-seq

302

Human cell line

ZBTB24 regulates the apoptosis of human T cells via CDCA7/TRAIL-receptor axis

Biochemical and Biophysical Research Communications

2.559

2019

RNA-seq

303

yeast

High production of fatty alcohols in Yarrowia lipolytica by coordination with glycolysis

Science China Chemistry

2019

RNA-seq

304

Human cell line

A reference system for BRCA mutation detection based on next-generation sequencing in the Chinese population

JOURNAL OF MOLECULAR DIAGNOSTICS

4.88

2019

capture

305

pig

Transcriptomic analysis of small intestinal mucosa from porcine epidemic diarrhea virus infected piglets

Microbial Pathogenesis

2.332

2019

RNA-seq

306

Human cell line

Nobiletin exhibits potent inhibition on tumor necrosis factor alphainduced calcification of human aortic valve interstitial cells via targeting ABCG2 and AKR1B1

Phytotherapy researcch

3.349

2019

RNA-seq

307

Human cell line

Establishment and characterization of a novel childhood acute lymphoblastic leukemia cell line, HXEX-ALL1, with chromosome 9p and 17p deletions

Cancer Cell International

3.96

2019

WGS

308

Human cell line

Nutrient Sensing by the Intestinal Epithelium Orchestrates Mucosal Antimicrobial Defense via Translational Control of Hes1

Cell Host & Microbe

17.872

2019

RNA-seq

309

Human cell line

Genetic Regulation of enoyl-CoA hydratase Domain-Containing 3 in Adipose Tissue Determines Insulin Sensitivity in African Americans and Europeans

DIABETES

7.273

2019

RNA-seq

310

Mouse

Dean flow assisted single cell and bead encapsulation for high performance single cell expression profiling

ACS Sensors

5.711

2019

scRNA-Seq

311

human

Germline-encoded TCR-MHC contacts promote TCR V gene bias in umbilical cord blood T cell repertoire

bioRxiv

2019

MHC capture

312

Muhe

Anticandidal Potential of Stem Bark Extract from Schima superba and the Identification of Its Major Anticandidal Compound

molecule

3.098

2019

RNA-seq

313

Mouse

Rescue of Retinal Degeneration in rd1 Mice by Intravitreally Injected Metformin

frontiers in Molecular Neuroscience

3.902

2019

RNA-seq

314

Pathogen

Clinical value of whole genome sequencing in severe sepsis and cluster nursing intervention

Journal of clinical and Pathological Research(china)

2019

Pathogen detection

315

Pathogen

The application of next-generation sequencing in diagnosing invasive pulmonary aspergillosis:three case reports

American Journal of Translational Research

3.061

2019

Pathogen detection

316

Bovine herpesvirus 1

Cellular microRNA bta-miR-2361 inhibits bovine herpesvirus 1 replication by directly targeting EGR1 gene

Veterinary Microbiology

2.524

2019

Pathogen detection

317

Zebrafish

Estrogen accelerates heart regeneration by promoting inflammatory responses in zebrafish

bioRxiv

2019

RNA-seq

318

umbilical cord blood cell

Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood

GigaScience

7.267

2019

scRNA-Seq

319

Mouse

Short-term High Fructose Intake Reprograms the Transcriptional Clock Rhythm of the Murine Extraorbital

Investigative Ophthalmology & Visual Science

3.388

2019

RNA-seq

320

Human cell line

Sequential treatment failures in response to BRAF/MEK and immune checkpoint inhibitors mediated by MAP2K2 and B2M mutations in melanoma

Experimental and Molecular Pathology

2.566

2019

WES

321

Human cell line

Cancerassociated fibroblasts contribute to cisplatin resistance by modulating ANXA3 in lung cancer cells

cancer science

4.372

2019

RNA-seq

322

human

Genetic and clinical findings in a large cohort of Chinese patients with suspected retinitis pigmentosa

AMERICAN JOURNAL OF OPHTHALMOLOGY

4.795

2019

WES

323

human

Bismuth drugs tackle Porphyromonas gingivalis and attune cytokine response in human cells

Metallomics

4.069

2019

RNA-seq

324

Mouse

Ferulic acid altered IL-17A/IL-17RA interaction and protected against imiquimod-induced psoriasis-like skin injury in mice

Food and Chemical Toxicology

3.977

2019

RNA-seq

325

Mouse

Alterations in transcriptome and antioxidant activity of naturally aged mice exposed to selenium-rich rice

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

2.8

2019

RNA-seq

326

Mouse

Integrated Omics Reveals Tollip as an Aggravator and Therapeutic Target for Hepatic IschemiaReperfusion Injury in Mice

hepatology

13.246

2019

RNA-seq

327

human

Screening, prenatal diagnosis, and prenatal decision for sex chromosome aneuploidy

Expert Review of Molecular Diagnostics

3.326

2019

NIFTY

328

human

Breast milk alkylglycerols sustain beige adipocytes through adipose tissue macrophages

JOURNAL OF CLINICAL INVESTIGATION

13.251

2019

RNA-seq

329

Zebrafish

Loss-of-function of sox3 causes follicle development retardation and reduces fecundity in zebrafish

Protein & Cell

6.228

2019

RNA-seq

330

Rice

A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice

JOURNAL OF EXPERIMENTAL BOTANY

5.354

2019

RNA-seq

331

Echinococcus

Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1

Parasites & Vectors

3.163

2019

MtDNA sequencing

332

Mouse

Embryoid body-based RNA-seq analyses reveal a potential TBBPA multifaceted developmental toxicity

Journal of Hazardous Materials

6.434

2019

RNA-seq

333

Human cell line

Glutaminyl cyclase inhibitor contributes to the regulation of HSP70, HSP90, actin, and ribosome on gene and protein levels in vitro

JOURNAL OF CELLULAR BIOCHEMISTRY

2.959

2018

RNA-seq

334

Next-Generation Sequencing and Emerging Technologies

SEMINARS IN THROMBOSIS AND HEMOSTASIS

3.345

2019

review

335

palmatum

Comparative transcriptome analysis of genes involved in response to thermal stress and leaf colour change of Acer palmatum

Scientia Horticulturae

1.624

2019

RNA-seq

336

Human cell line

ZEB1 Represses Neural Differentiation and Cooperates with CTBP2 to Dynamically Regulate Cell Migration during Neocortex Development

cell reports

8.282

2019

RNA-seq

337

Rat

Transcriptome profiling of dorsal root ganglia in a rat model of complex regional pain syndrome type-I reveals potential mechanisms involved in pain

Journal of Pain Research

2.645

2019

RNA-seq

338

crab

Transcriptomic analysis provides insight into the mechanism of salinity adjustment in swimming crab Portunus trituberculatus

Genes & Genomics

0.68

2019

RNA-seq

339

virus

Full genome sequence of a novel potexvirus from Euonymus bungeanus Maxim based on RNA-Seq analysis

Archives of Virology

2.16

2019

RNA-seq

340

Mouse

Hepatic Interferon Regulatory Factor 6 Alleviates Liver Steatosis and Metabolic Disorder by Transcriptionally Suppressing Peroxisome ProliferatorActivated Receptor γ in Mice

hepatology

13.246

2019

RNA-seq

341

actinobacterium

Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis)

Journal of Microbiology

2.319

2019

WGS

342

human

Analysis of Normal Tissues Adjacent to the Tumour-specific expressed genes in Breast Cancer

Hereditas(Beijing)

2019

RNA-seq

343

E.coli

Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification

frontiers in genetics

4.151

2019

RNA-seq

344

Human cell line

The E3 ligase VHL promotes follicular helper T cell differentiation via glycolytic-epigenetic control

JOURNAL OF EXPERIMENTAL MEDICINE

10.79

2019

RNA-seq

345

Arabidopsis thaliana

mTERF5 Acts as a Transcriptional Pausing Factor to Positively Regulate Transcription of Chloroplast psbEFLJ

molecular plant

9.326

2019

RNA-seq

346

metagenome

Altered respiratory virome and serum cytokine profile associated with recurrent respiratory tract infections in children

Nature Communications

12.124

2019

Pathogen detection

347

SEQdata-BEACON: a comprehensive database of sequencing performance and statistical tools for performance evaluation and yield simulation in BGISEQ-500

bioRxiv

2019

Database&statistical tools

348

Human cell line

Pyroptosis of MCF7 Cells Induced by the Secreted Factors of hUCMSCs

Stem Cells International

3.989

2019

RNA-seq

349

Human cell line

Prospect and challenge of detecting dynamic gene copy number increases in stem cells by whole genome sequencing

Journal of Molecular Medicine

4.938

2019

WGS

350

human

Germline DNA damage repair gene alterations in Chinese prostate patients: More than HRR and MMR

2019 ASCO Annual Meeting Abstracts

2019

WES

351

human

A multi-institutional investigation assessing prevalence of germline genetic alterations in Chinese patients with gastric carcinoma

2019 ASCO Annual Meeting Abstracts

2019

capture

352

Clinopodium chinense

Transcriptome Analysis of Clinopodium chinense (Benth.) O. Kuntze and Identification of Genes Involved in Triterpenoid Saponin Biosynthesis

International Journal of Molecular Sciences

3.226

2019

RNA-seq

353

Mouse

Transcriptional Profiling of Daily Patterns of mRNA Expression in the C57BL/6J Mouse Cornea

CURRENT EYE RESEARCH

2.12

2019

RNA-seq

354

metagenome

Age-dependent sexual dimorphism in the adult human gut microbiota

bioRxiv

2019

metagenome

355

Chlorella

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

bioRxiv

2019

RNA-seq

356

mouse

Proteomics and Transcriptomics Analysis Reveals Clues into the Mechanism of the Beneficial Effect of Electrical Stimulation on Rat Denervated Gastrocnemius Muscle

Cellular Physiology and Biochemistry

5.5

2019

RNA-seq

357

human

Prenatal Diagnosis of Fetuses with Increased Nuchal Translucency by Genome Sequencing Analysis

bioRxiv

2019

CNV-seq

358

Human cell line

c-Jun Overexpressing CAR-T Cells are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity

bioRxiv

2019

RNA-seq

359

mouse

Interleukin-17 receptor D constitutes an alternative receptor for interleukin-17A important in psoriasis-like skin inflammation

Science Immunology

2019

RNA-seq

360

mouse

Activation of P-TEFb by cAMP-PKA signaling in autosomal dominant polycystic kidney disease

Science Advances

11.511

2019

RNA-Seq&ChIP-Seq

361

mouse

The transcription factor Shox2 shapes thalamocortical neuron firing properties by regulation of key ion channels

bioRxiv

2019

RNA-seq

362

Arabidopsis thaliana

Overexpression of AtAGT1 promoted root growth and development during seedling establishment

Plant Cell Reports

2.989

2019

RNA-seq

363

Human cell line

STYK1 promotes tumor growth and metastasis by reducing SPINT2/HAI-2 expression in non-small cell lung cancer

Cell Death & Disease

5.638

2019

RNA-seq

364

human

A truncating CLDN9 variant is associated with autosomal recessive nonsyndromic hearing loss

Human Genetics

3.93

2019

WGS

365

Pathogen

The diagnostic value of metagenomic next-generation sequencing for identifying Streptococcus pneumoniae in paediatric bacterial meningitis

BMC Infectious Diseases

2.62

2019

Pathogen detection

366

Bacillus thuringiensis

Transcriptome profiling analysis of the intoxication response in midgut tissue of Agrotis ipsilon larvae to Bacillus thuringiensis Vip3Aa protoxin

Pesticide Biochemistry and Physiology

3.44

2019

RNA-seq

367

human

Development of coupling controlled polymerizations by adapter-ligation in mate-pair sequencing for detection of various genomic variants in one single assay

DNA RESEARCH

5.415

2019

long mate pair library

368

Actualités du séquen?age dADN-Chroniques génomiques

Med Sci (Paris)

2019

review

369

All Aboard The Genome Exprees: Is a new generation of DNA sequencing technology about to hit the fast track?

Genetic Engineering & Biotechnology New

2019

review

370

Arthropod Genome Sequencing and Assembly Strategies

Insect Genomics

2019

review

371

Clinical metagenomic next-generation sequencing for pathogen detection

Annual Review of Pathology: Mechanisms of Disease

2019

review

372

metagenome

Exploring the human microbiome: The potential future role of next-generation sequencing in disease diagnosis and treatment

Frontiers in Immunology

5.511

2019

review

373

nasopharyngeal carcinoma

FOXA1 reprograms the TGF-β-stimulated transcriptional program from a metastasis promoter to a tumor suppressor in nasopharyngeal carcinoma

Cancer letters

6.491

2019

RNA-seq

374

High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis and meningitis A narrative review and clinical appraisal

Clinical Microbiology and Infection

5.394

2019

review

375

Caenorhabditis elegans

Systematic evaluation of C elegans lincRNAs with CRISPR knockout mutants

Genome Biology

13.214

2019

lncRNA

376

Tobacco

Tolerance of Transplastomic Tobacco Plants Overexpressing a Theta Class Glutathione Transferase to Abiotic and Oxidative Stresses

Front. Plant Sci

3.678

2019

RNA-Seq

377

haematococcus pluvialis

Comparative transcriptome analysis of a long-time span two-step culture process reveals a potential mechanism for astaxanthin and biomass hyper-accumulation in Haematococcus pluvialis JNU35

Biotechnol Biofuels

5.497

2019

RNA-Seq&Transcriptome Sequencing

378

Mouse

Identifcation of key genes, pathways, and miRNA/mRNA regulatory networks of CUMS-induced depression in nucleus accumbens by integrated bioinformatics analysis

Neuropsychiatric Disease and Treatment

2.195

2019

RNA-Seq&Small RNA

379

Wallemia mellicola

Genomic Evidence of Recombination in the Basidiomycete Wallemia mellicola

genes

3.191

2019

WGS

380

gastric cancer

LncRNA TUBA4B functions as a competitive endogenous RNA to inhibit gastric cancer progression by elevating PTEN via sponging miR-214 and miR-216a/b

Cancer Cell International

3.96

2019

lncRNA

381

human

A comprehensive assessment of NextGeneration Sequencing variants validation using a secondary technology

Molecular Genetics & Genomic Medicine

2.695

2019

capture

382

Spodoptera frugiperda

Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

bioRxiv

2019

stLFR

383

human

Differential Roles of the mTOR-STAT3 Signaling in Dermal γδ T Cell Effector Function in Skin Inflammation

cell reports

8.032

2019

RNA-seq

384

Mouse

Hyaluronan synthase 2mediated hyaluronan production mediates Notch1 activation and liver fibrosis

Science Translational Medicine

16.71

2019

RNA-seq

385

gastric cancer

Hydroxychloroquine enhances the antitumor effects of BC001 in gastric cancer

International Journal of Oncology

3.333

2019

RNA-seq

386

rice

The nuclear-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice

Journal of experimental botany

5.354

2019

RNA-seq

387

virus

Differential expression profiling of lncRNAs related to EpsteinBarr virus infection in epithelial cells

JOURNAL OF MEDICAL VIROLOGY

1.988

2019

lncRNA

388

Pathogen

Metagenomic Next-generation Sequencing of Cerebrospinal Fluid for the Diagnosis of Central Nervous System Infections: A Multicentre Prospective Study

bioRxiv

2019

Pathogen detection

389

A symbiotic balancing act: arbuscular mycorrhizal specificity and specialist fungus gnat pollination in the mycoheterotrophic genus Thismia (Thismiaceae)

Annals of Botany

3.646

2019

WGS

390

Lotus

Transcription Profiles Reveal the Regulatory Synthesis of Phenols during the Development of Lotus Rhizome (Nelumbo nucifera Gaertn)

International Journal of Molecular Sciences

3.687

2019

RNA-seq

391

Atlantic herring

A chromosome-level assembly of the Atlantic herring detection of a supergene and other signals of selection

bioRxiv

2019

Hi-C library

392

metagenome

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-na?ve type 2 diabetics

bioRxiv

2019

metagenome

393

lung cancer

Irradiation increases the immunogenicity of lung cancer cells and irradiation-based tumor cell vaccine elicits tumor-specific T cell responses in vivo

OncoTargets and Therapy

2.656

2019

RNA-seq

394

Mouse

Changes in mRNA of liver immune-related genes in obese mice induced by long-term high-fat diet

chinese Journal of cellular and molecular immunology(china)

2019

RNA-seq

395

Pathogen

Diagnosis of osteoarticular tuberculosis via metagenomic next?generation sequencing: A case report

Experimental and Therapeutic Medicine

1.41

2019

Pathogen detection

396

anemone

Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia)

Archives of Toxicology

5.728

2019

RNA-seq

397

CD4+ T cells

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells

bioRxiv

2019

scRNA-Seq

398

Chicken

Integrative Analyses of mRNA Expression Profile Reveal the Involvement of IGF2BP1 in Chicken Adipogenesis

International Journal of Molecular Sciences

4.183

2019

RNA-seq

399

human

Muscle-strain injury exudate favors acute tissue healing and prolonged connective tissue formation in humans

FASEB JOURNAL

5.391

2019

RNA-seq

400

Medicago truncatula

MtBZR1 Plays an Important Role in Nodule Development in Medicago truncatula

International Journal of Molecular Sciences

4.183

2019

RNA-seq

401

Lung adenocarcinoma

Lung adenocarcinoma-intrinsic GBE1 signaling inhibits anti-tumor immunity

BMC Genomics

3.501

2019

RNA-seq

402

pig

Comprehensive transcriptomic view of the role of the LGALS12 gene in porcine subcutaneous and intramuscular adipocytes

Molecular Cancer

10.679

2019

RNA-seq

403

human

Delta-like ligand 4/DLL4 regulates the capillarization of liver sinusoidal endothelial cell and liver fibrogenesis

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

4.739

2019

RNA-seq

404

Tea Polyphenols

Pathogenic Effects and Potential Regulatory Mechanisms of Tea Polyphenols on Obesity

BioMed Research International

2.197

2019

Small RNA

405

sarcoma

Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

BMC Cancer

2.933

2019

WES

406

hepar

Hepatocyte TRAF6 Aggravates Hepatic Inflammation and Fibrosis by Promoting Lys6 Linked Polyubiquitination of ASK1

hepatology

14.971

2019

RNA-seq

407

human

Clinical diagnosis of single-gene disorders and chromosomal abnormalities based on BGISEQ-500 platform

bioRxiv

2019

capture

408

metagenome

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

bioRxiv

2019

metagenome

409

human

Mixed-lineage leukemia protein 2 suppresses ciliary assembly by the modulation of actin dynamics and vesicle transport

Cell Discovery

4.6

2019

RNA-seq

410

Human cell line

Systematic comparison of germline variant calling pipelines cross multiple next-generation sequencers

Scientific Reports

4.01

2019

WGS&WES

411

noroviruses

Replication and transcriptionomic analysis of human noroviruses in human intestinal enteroids

American Journal of Translational Research

3.266

2019

RNA-seq

412

Goose

Endoplasmic Reticulum Stress Marker Gene Grp78 Is Involved in Regulation of Immune/Inflammatory State of Goose Fatty Liver

Acta Veterinaria et Zootechnica Sinica(china)

2019

RNA-seq

413

metagenome

Alterations in the human gut microbiome associated with Helicobacter pylori infection

FEBS open bio

1.959

2019

metagenome

414

human

Expanding the Clinical Spectrum of Osteogenesis Imperfecta Type V: 13 Additional Patients and Review

Frontiers in Endocrinology

3.634

2019

WES

415

Tea

Integrated transcriptomic and phytochemical analyses provide insights into characteristic metabolites variation in leaves of 1-year-old grafted tea (Camellia sinensis)

Tree Genetics & Genomes

1.862

2019

RNA-seq

416

leukocyte

Assessment of the gene expression profiles of leukocytes from different isolations

bioRxiv

2019

RNA-seq

417

carcinoma

Fumaratehydratase-deficient renal cell carcinoma: a clinicopathological and molecular study of 13 cases

Journal of Clinical Pathology

2.346

2019

WGS

418

Yellow Mottle Disease

Identification and Characterization of a Novel Emaravirus Associated With Jujube (Ziziphus jujuba Mill.) Yellow Mottle Disease

Frontiers in Microbiology

4.259

2019

Small RNA

419

Neuroblastoma

Exosomal hsa-miR199a-3p Promotes Proliferation and Migration in Neuroblastoma

Frontiers in oncology

4.137

2019

Small RNA

420

breast cancer

CD137 promotes bone metastasis of breast cancer by enhancing the migration and osteoclast differentiation of monocytes/macrophages

Theranostics

8.063

2019

RNA-seq

421

Human cell line

Fas signaling-mediated TH9 cell differentiation favors bowel inflammation and antitumor functions

Nature Communications

11.878

2019

RNA-seq

422

Arabidopsis thaliana

RAP2.4c and RAP2.4d in the regulation of cold stress and cold priming in Arabidopsis thaliana

REPOSITORIUM DER FREIEN UNIVERSIT?T BERLIN(Germany)

2019

RNA-seq

423

chronic lymphocytic leukemia

Elevated FANCA expression determines a worse prognosis in chronic lymphocytic leukemia and interferes with p53 function

FASEB JOURNAL

5.391

2019

RNA-seq

424

Melanocytes

The Long Noncoding RNA UCA1 Negatively Regulates Melanogenesis in Melanocytes

Journal of Investigative Dermatology

6.29

2019

lncRNA

425

Poncirus trifoliata

Enhanced ROS scavenging and sugar accumulation contribute to drought tolerance of naturally occurring autotetraploids in Poncirus trifoliata

PLANT BIOTECHNOLOGY JOURNAL

6.84

2018

RNA-seq

426

Ancient Mammals

Improving Species Identification of Ancient Mammals Based on Next-Generation Sequencing Data

genes

3.331

2019

WGS

427

metagenome

Compositional and functional features of the female premenopausal and postmenopausal gut microbiota

FEBS LETTERS

2.675

2019

metagenome

428

Pathogen

Genome-wide Transcript Structure Resolution Reveals Abundant Alternate Isoform Usage from Murine Gammaherpesvirus 68

cell reports

7.82

2019

RNA-seq

429

CADASIL

Novel and Recurring NOTCH3 Mutations in Two Chinese Patients with CADASIL

Neurodegenerative Diseases

2.80

2019

WES

430

metagenome

A survey of the sperm whale (Physeter catodon) commensal microbiome

PeerJ

2.35

2019

metagenome

431

nasopharyngeal carcinoma

DHRS2 mediates cell growth inhibition induced by Trichothecin in nasopharyngeal carcinoma

Journal of Experimental & Clinical Cancer Research

5.65

2019

RNA-seq

432

metagenome

Calorie restriction intervention induces enterotype-associated BMI loss in nonobese individuals

bioRxiv

2019

metagenome

433

Scutellaria

The complete chloroplast genome of Scutellaria indica var. coccinea (Lamiaceae), an endemic taxon in Korea

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

434

Firmiana

Comparative analyses of chloroplast genomes among three Firmiana species: Identification of mutational hotspots and phylogenetic relationship with other species of Malvaceae

plant gene

2019

chloroplast Sequencing

435

Immune Cell

A Single-Cell Immune Atlas of Triple Negative Breast Cancer Reveals Novel Immune Cell Subsets

bioRxiv

2019

scRNA-Seq

436

Candida albicans

Susceptibility to Medium-Chain Fatty Acids Is Associated with Trisomy of Chromosome 7 in Candida albicans

mSphere

4.447

2019

WGS

437

Cancer Cells

Engineering Forward Genetics into Cultured Cancer Cells for Chemical Target Identification

cell chemical biology

6.762

2019

WES

438

zebrafish

Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification

Nature Communications

11.878

2019

RNA-seq

439

Monascus

Effects of Different G-Protein α-Subunits on Growth, Development and Secondary Metabolism of Monascus ruber M7

Frontiers in Microbiology

4.259

2019

RNA-seq

440

banana

Characterization of the complete chloroplast genome of Sanming wild banana (Musa itinerans) and phylogenetic relationships

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

441

kumquat

Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle)

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

442

Pedicularis

The complete chloroplast genome of Pedicularis alaschanica (Orobanchaceae)

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

443

Kuepferia otophora

The complete chloroplast genome sequence of an Alpine flowering plant Kuepferia otophora (Gentianaceae)

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

444

bacteria

Response of Cupriavidus basilensis B-8 to CuO nanoparticles enhances Cr(VI) reduction

Science of The Total Environment

5.59

2019

RNA-seq

445

Human cell line

RNA-Bloom provides lightweight reference-free transcriptome assembly for single cells

bioRxiv

2019

scRNA-Seq

446

Passiflora edulia Sims

Characterization of the complete chloroplast genome of a purple passion flower variety Pingtang No.1 (Passiflora edulia Sims) in China and phylogenetic relationships

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

447

Tetraena mongolica Maxim

De novo transcriptome sequencing and identification of genes related to salt and PEG stress in Tetraena mongolica Maxim

Trees

1.799

2019

De novo transcriptome

448

Nasopharyngeal Carcinoma

Detection and Analysis of RNAs Expression Profile for Methylated Candidate Tumor Suppressor Genes in Nasopharyngeal Carcinoma

Anti-Cancer Agents in Medicinal Chemistry

2.18

2019

RNA-seq

449

colorectal cancer cells

Exosomal transfer of p-STAT3 promotes acquired 5-FU resistance in colorectal cancer cells

Journal of Experimental & Clinical Cancer Research

5.65

2019

RNA-seq

450

human embryonic stem cell

Toxicogenomic analyses of the effects of BDE-47/209, TBBPA/S and TCBPA on early neural development with a human embryonic stem cell in vitro differentiation system

Toxicology and Applied Pharmacology

3.585

2019

RNA-seq

451

Lactobacillus casei

A single bacterium restores the microbiome dysbiosis to protect bones from destruction in a rat model of rheumatoid arthritis

Microbiome

10.465

2019

metagenome

452

Gomphonemopsis sieminskae

Morphology and molecular phylogeny of Gomphonemopsis sieminskae sp. nov. isolated from brackish waters of the East China Sea coast

Plant and Fungal Systematics

2019

WGS

453

metagenome

Gut microbiome affects the response to anti-PD-1 immunotherapy in patients with hepatocellular carcinoma

Journal for ImmunoTherapy of Cancer

8.68

2019

metagenome

454

Human cell line

Impact of sequencing depth and technology on de novo RNA-Seq assembly

BMC Genomics

3.501

2019

De novo transcriptome

455

Gerbera jamesonii Bolus

Characterization of the complete chloroplast genome of Gerbera jamesonii Bolus in China and phylogenetic relationships

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

456

human

Identification of a novel EVC variant in a HanChinese family with Ellisvan Creveld syndrome

Molecular Genetics & Genomic Medicine

2.448

2019

WES

457

Arabidopsis thaliana

m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants

current biology

9.193

2019

MeRIP

458

Glioblastoma

GenomeWide CRISPRCas9 Screening Identifies NF‐κB/E2F6 Responsible for EGFRvIIIAssociated Temozolomide Resistance in Glioblastoma

Advanced Science

15.804

2019

RNA-seq

459

Haemonchus contortus

Dafachronic acid promotes larval development in Haemonchus contortus by modulating dauer signalling and lipid metabolism

PLoS Pathogens

6.463

2019

RNA-seq

460

Phanerochaete chrysosporium

Sulfadiazine biodegradation by Phanerochaete chrysosporium: Mechanism and degradation product identification

Chemosphere

5.108

2019

RNA-seq

461

mouse

Regulation of the inflammatory response by vascular grafts modified with Aspirin-Triggered Resolvin D1 promotes blood vessel regeneration

Acta Biomaterialia

6.638

2019

RNA-seq

462

Barley

Knockout of the HvCKX1 or HvCKX3 Gene in Barley (Hordeum vulgare L.) by RNA-Guided Cas9 Nuclease Affects the Regulation of Cytokinin Metabolism and Root Morphology

Cells

5.656

2019

RNA-seq

463

tobacco

Expression of AtLEC2 and AtIPTs promotes embryogenic callus formation and shoot regeneration in tobacco

BMC Plant Biology

3.67

2019

RNA-seq

464

insect

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

GigaScience

7.27

2019

review

465

soybean

Transcriptomic analysis reveals the possible roles of sugar metabolism and export for positive mycorrhizal growth responses in soybean

Physiologia Plantarum

3.00

2018

RNA-seq

466

periodontitis

M1 macrophages regulate TLR4/AP1 via paracrine to promote alveolar bone destruction in periodontitis

Oral Diseases

2.63

2019

RNA-seq

467

Human cell line

Epigenetic alterations are associated with tumor mutation burden in non-small cell lung cancer

Journal for ImmunoTherapy of Cancer

8.676

2019

WES

468

Chelmon rostratus

Chromosome-level genome assembly of a butterflyfish, Chelmon rostratus

bioRxiv

2019

stLFR

469

Human cell line

Identification of Main Genetic Causes Responsible for Non-Syndromic Hearing Loss in a Peruvian Population

genes

3.331

2019

WGS

470

Human cell line

Bioinformatic Analysis of Transcriptomic Data Reveals Novel Key Genes Regulating Osteogenic Differentiation of Human Adipose Stem Cells

Stem Cells International

3.902

2019

RNA-seq

471

mice

Hyperuricemia is associated with impaired intestinal permeability in mice

American Journal of Physiology-Gastrointestinal and Liver Physiology

3.729

2019

RNA-seq

472

Aspergillus cristatus

Genetic Basis and Function of Mating-Type Genes in Aspergillus cristatus

Mycosphere

1.992

2019

RNA-seq

473

Novosphingobium

Transcriptome Analysis of Novosphingobium pentaromativorans US6-1 Reveals the Rsh Regulon and Potential Molecular Mechanisms of N-acyl-l-homoserine Lactone Accumulation

Int J Mol Sci

4.183

2018

RNA-seq

474

zebrafish

TALE and NF-Y co-occupancy marks enhancers of developmental control genes during zygotic genome activation in zebrafish

bioRxiv

2019

RNA-seq

475

lung cancer

CDYL promotes the chemoresistance of small cell lung cancer by regulating H3K27 trimethylation at the CDKN1C promoter

Theranostics

8.063

2019

RNA-seq

476

Human cell line

Characterizing the Emergence of Liver and Gallbladder from the Embryonic Endoderm through Single-Cell RNA-Seq

bioRxiv

2019

scRNA-Seq

477

Human Herpes Virus

The research between detection of Human Herpes Virus DNA and the prognosis, immune functions of patients with sepsis

Chin J Emerg Med(china)

2019

Pathogen detection

478

Human cell line

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

bioRxiv

2019

RNA-seq

479

Heortia vitessoides

De novo Analysis of Heortia vitessoides (Lepidoptera: Crambidae) Transcriptome and Identification of Putative Cytochrome P450 Monooxygenase Genes

JOURNAL OF ENTOMOLOGICAL SCIENCE

0.513

2019

De novo transcriptome

480

Mulberry

Physiological and Transcriptomic Changes during the Early Phases of Adventitious Root Formation in Mulberry Stem Hardwood Cuttings

International Journal of Molecular Sciences

4.183

2019

RNA-seq

481

non-small cell lung cancer

Integration of metabolomics and transcriptomics to reveal metabolic characteristics and key targets associated with cisplatin resistance in non-small cell lung cancer

Journal of Proteome Research

3.78

2019

RNA-seq

482

Bactrocera

Azadirachtin A inhibits the growth and development of Bactrocera dorsalis larvae by releasing cathepsin in the midgut

Ecotoxicology and Environmental Safety

4.527

2019

RNA-seq

483

Garlic

Transcriptome Analysis of Low-Temperature-Induced Breaking of Garlic Aerial Bulb Dormancy

International Journal of Genomics

2.303

2019

De novo transcriptome

484

rat

Single xenotransplant of rat brown adipose tissue prolonged the ovarian lifespan of aging mice by improving follicle survival

aging cell

7.346

2019

RNA-seq

485

mesenchymal stem/stromal cells

Single-cell RNA-seq highlights heterogeneity in human primary Whartons Jelly mesenchymal stem/stromal cells cultured in vitro

bioRxiv

2019

scRNA-Seq

486

human

Three GLI2 mutations combined potentially underlie nonsyndromic cleft lip with or without cleft palate in a Chinese pedigree

Molecular Genetics & Genomic Medicine

2.448

2019

WES

487

metagenome

Fecal microbiota transplantation brings about bacterial strain displacement in patients with inflammatory bowel diseases

bioRxiv

2019

metagenome

488

Human cell line

Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis

molecular cell

14.548

2019

RNA-seq

489

non-small cell lung cancer

Development and Validation of Tumor-educated Blood Platelets Integrin Alpha 2b (ITGA2B) RNA for Diagnosis and Prognosis of Non-small-cell Lung Cancer through RNA-seq

International Journal of Biological Sciences

4.067

2019

RNA-seq

490

Cucurbita pepo

Whole-genome resequencing of Cucurbita pepo morphotypes to discover genomic variants associated with morphology and horticulturally valuable traits

Horticulture Research

3.64

2019

WGS

491

metagenome

Apparent performance of metagenomic next-generation sequencing in the diagnosis of cryptococcal meningitis: a descriptive study

JOURNAL OF MEDICAL MICROBIOLOGY

1.926

2019

metagenome

492

Human cell line

Slc6a8-Mediated Creatine Uptake and Accumulation Reprogram Macrophage Polarization via Regulating Cytokine Responses

immunity

21.522

2019

RNA-seq

493

NGS: Gestern, heute und morgen

medizinische genetik (Germany)

2019

review


494

human

Genotyping, generation and proteomic profiling of the first human autosomal dominant osteopetrosis type II-specific induced pluripotent stem cells

Stem Cell Research & Therapy

4.627

2019

WES

495

Mycobacterium tuberculosis

Evaluation of Whole-Genome Sequence Method to Diagnose Resistance of 13 Anti-tuberculosis Drugs and Characterize Resistance Genes in Clinical Multi-Drug Resistance Mycobacterium tuberculosis Isolates From China

Frontiers in Microbiology

4.259

2019

WGS

496

salivary adenoid cystic

Tumor?derived exosomes educate fibroblasts to promote salivary adenoid cystic carcinoma metastasis via NGF?NTRK1 pathway

Oncology Letters

1.871

2019

RNA-seq

497

Staphylococcus

Decreased metabolism and increased tolerance to extreme environments in Staphylococcus warneri during longterm spaceflight

MicrobiologyOpen

2.738

2019

RNA-seq

498

cervical cancer

REX1 promotes EMT-induced cell metastasis by activating the JAK2/STAT3-signaling pathway by targeting SOCS1 in cervical cancer

Oncogene

6.634

2019

RNA-seq

499

rat

Effects of Bakuchiol on chondrocyte proliferation via the PI3KAkt and ERK1/2 pathways mediated by the estrogen receptor for promotion of the regeneration of knee articular cartilage defects

Cell Proliferation

5.039

2019

RNA-seq

500

Pathogen

Incremental value of metagenomic next generation sequencing for the diagnosis of suspected focal infection in adults

Journal of Infection

5.099

2019

Pathogen detection

501

follicular lymphoma

M7FLIPI is not prognostic in follicular lymphoma patients with firstline rituximab chemofree therapy

British Journal of Haematology

5.206

2019

capture

502

Penicillium oxalicum

Normal transcription of cellulolytic enzyme genes relies on the balance between the methylation of H3K36 and H3K4 in Penicillium oxalicum

Biotechnology for Biofuels

5.452

2019

RNA-seq



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