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MGI Platform Publications

2019-11-15

species

Species categories

Publications

Journal Title

IF

Year

Techology

1

Leaf armor

animal

Comparative transcriptome analysis of chemosensory genes in two sister leaf beetles provides insights into chemosensory speciation

Insect Biochemistry and Molecular Biology

3.756

2016

RNA-Seq

2

human

human

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

Clinical Epigenetics

4.987

2016

Small RNA

3

human

human

Establishment of a normal-derived estrogen receptor-positive cell line comparable to the prevailing human breast cancer subtype

Oncotarget

5.168

2017

RNA-Seq

4

human

human

Overexpression of placenta specific 8 is associated with malignant progression and poor prognosis of clear cell renal cell carcinoma

International Urology and Nephrology

1.564

2017

RNA-Seq

5

Rice

plant

Overexpression of OsHSP18.0-CI Enhances Resistance to Bacterial Leaf Streak in Rice

Rice

3.739

2017

RNA-Seq

6

Klebsiella

microorganism

Coordination of metabolic pathways: Enhanced carbon conservation in 1,3-propanediol production by coupling with optically pure lactate biosynthesis

Metabolic Engineering

8.142

2017

RNA-Seq

7

human

human

A reference human genome dataset of the BGISEQ-500 sequencer

GigaScience

7.267

2017

WGS

8

Rhodiola crenulata

plant

Draft genome sequence of the Tibetan medicinal herb, Rhodiola crenulata

GigaScience

7.267

2017

RNA-Seq

9

Drosophila

animal

Drug induces depression-like phenotypes and alters gene expression profiles in Drosophila

Brain Research Bulletin

3.033

2017

RNA-Seq

10

Dog&wolf

animal

Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

GigaScience

7.267

2017

WGS

11

human

human

Recessive mutation in EXOSC3 associates with mitochondrial dysfunction and pontocerebellar hypoplasia

Mitochondrion

3.704

2017

RNA-Seq

12

oilseed rape

plant

Genome-scale mRNA transcriptomic insights into the responses of oilseed rape (Brassica napus L.) to varying boron availabilities

Plant and Soil

3.052

2017

RNA-Seq

13

Mouse

animal

Nuclear carbonic anhydrase 6B associates with PRMT5 to epigenetically promote IL-12 expression in innate response

PNAS

9.661

2017

RNA-Seq&ChIP-Seq

14

human

human

Methyltransferase SETD2-Mediated Methylation of STAT1 Is Critical for Interferon Antiviral Activity

Cell

30.41

2017

RNA-Seq

15

Arabidopsis thaliana

plant

AtACS8 plays a critical role in the early biosynthesis of ethylene elicited by copper ions in Arabidopsis

Journal of Cell Science

4.431

2017

RNA-Seq

16

human

human

The FOXN3-NEAT1-SIN3A repressor complex promotes progression of hormonally responsive breast cancer

The Journal of Clinical Investigation

12.784

2017

ChIP-Seq

17

Amphioxus

animal

Transcriptome-wide analysis of immune-responsive microRNAs against poly (I:C) challenge in Branchiostoma belcheri by deep sequencing and bioinformatics

Oncotarget

5.168

2017

Small RNA

18

human

human

PBRM1 restricts the basal activity of innate immune system through repressing RIG-I-like receptor signaling and is a potential prognostic biomarker for colon cancer

The Journal of Pathology

6.894

2017

RNA-Seq

19

Amphioxus

animal

Exploring gene expression changes in the amphioxus gill after poly(I:C) challenge using digital expression profiling

Fish & Shellfish Immunology

3.148

2017

RNA-Seq

20

Sea cucumber

animal

Genome-wide analysis of gene expression profile in the respiratory tree of sea cucumber (Apostichopus japonicus) in response to hypoxia conditions

Journal of the Marine Biological Association of the United Kingdom

1.038

2017

RNA-Seq

21

human

human

FH535 Inhibits Proliferation and Motility of Colon Cancer Cells by Targeting Wnt/β-catenin Signaling Pathway

Journal of Cancer

2.916

2017

RNA-Seq

22

Mouse

animal

Data Descriptor: RNA sequencing analysis of activated macrophages treated with the anti-HIV ABX464 in intestinal inflammation

Scientific Data

4.836

2017

RNA-Seq

23

Mouse

animal

Orally Administrated Bakers Yeast beta-Glucan Promotes Glucose and Lipid Homeostasis in the Livers of ob/ob Mice

Journal of Agricultural and Food Chemistry

3.154

2017

RNA-Seq

24

Bradysia odoriphaga

animal

Using Next-Generation Sequencing to Detect Differential Expression Genes in Bradysia odoriphaga after Exposure to Insecticides

International Journal of Molecular Sciences

3.226

2017

RNA-Seq

25

Antler cup coral

animal

Systemic response of the stony coral Pocillopora damicornis against acute cadmium stress

Aquatic Toxicology

4.129

2017

RNA-Seq

26

Mouse

animal

Characteristics of NK cells from leukemic microenvironment in MLL-AF9 induced acute myeloid leukemia

Molecular Immunology

3.236

2017

RNA-Seq

27

Sea cucumber

animal

Differential gene expression in the intestine of sea cucumber (Apostichopus japonicus) under low and high salinity conditions

Comparative Biochemistry and Physiology D-Genomics & Proteomics

2.857

2017

RNA-Seq

28

Human cell line

human

Dual inhibition of DNMTs and EZH2 can overcome both intrinsic and acquired resistance of myeloma cells to IMiDs in a cereblonindependent manner

Molecular oncology

5.314

2017

RNA-seq

29

Human leukemia

human

Heterogeneous effects of M-CSF isoforms on the progression of MLL-AF9 leukemia

Immunology and cell biology

4.557

2017

RNA-seq

30

Ramie

plant

Gene expression profiling of ramie roots during hydroponic induction and adaption to aquatic environment

Genomics Data

2.801

2017

RNA-Seq

31

human

human

Direct inhibition of ACTN4 by ellagic acid limits breast cancer metastasis via regulation of β-catenin stabilization in cancer stem cells

Journal of Experimental & Clinical Cancer Research

5.189

2017

RNA-Seq

32

Penicillium

microorganism

Identification of differentially expressed genes involved in spore germination of Penicillium expansum by comparative transcriptome and proteome approaches

MicrobiologyOpen

2.747

2017

RNA-Seq

33

Pancreatic ductal adenocarcinoma

human

High expression of diffuse panbronchiolitis critical region 1 gene promotes cell proliferation, migration and invasion in pancreatic ductal adenocarcinoma

Biochemical and Biophysical Research Communications

2.466

2017

RNA-Seq

34

human

human

Probing impaired neurogenesis in human brain organoids exposed to alcohol

Integrative Biology

3.252

2017

RNA-Seq

35

human

human

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

GigaScience

7.267

2017

metagenome

36

Salt grass

plant

Transcriptome sequencing and comparative analysis of differentially-expressed isoforms in the roots of Halogeton glomeratus under salt stress

Gene

2.415

2017

RNA-Seq

37

Green carp

animal

Transcriptomic analysis reveals transgenerational effect of hypoxia on the neural control of testicular functions

Aquatic Toxicology

4.129

2017

RNA-Seq

38

Mouse

animal

Effects of In Utero PFOS Exposure on Transcriptome, Lipidome and Function of Mouse Testis

Environmental Science & Technology

6.198

2017

RNA-Seq

39

human

human

Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing

PLOS ONE

3.057

2018

WGS

40

Snail&oyster

animal

Conserved and ubiquitous expression of piRNAs and PIWI genes in mollusks antedates the origin of somatic PIWI/piRNA expression to the root of bilaterians

bioRxiv

2018

Small RNA

41

Arabidopsis thaliana

plant

Phytochrome A Negatively Regulates the Shade Avoidance Response by Increasing Auxin/Indole Acidic Acid Protein Stability

Developmental Cell

9.174

2018

RNA-Seq

42

watermelon

plant

Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon

PLOS ONE

3.057

2018

RNA-Seq

43

Artemisia annua

plant

A novel HD-ZIP IV/MIXTA complex promotes glandular trichome initiation and cuticle development in Artemisia annua

New Phytologist

7.33

2018

RNA-Seq

44

human

human

A novel mutation in PRPF31, causative of autosomal dominant retinitis pigmentosa, using the BGISEQ-500 sequencer

International journal of ophthalmology

1.1

2018

WES

45

Rat

animal

Preinduction with bone morphogenetic protein-2 enhances cardiomyogenic differentiation of c-kit+ mesenchymal stem cells and repair of infarcted myocardium

International Journal of Cardiology

6.189

2018

RNA-seq

46

Arabidopsis thaliana

plant

The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides

Journal of Experimental Botany

5.83

2018

RNA-seq

47

human

animal

An integrated biomanufacturing platform for the large-scale expansion and neuronal differentiation of human pluripotent stem cell-derived neural progenitor cells"

Acta Biomaterialia

6.319

2018

RNA-seq

48

Mouse

animal

Cambogin suppresses dextran sulphate sodiuminduced colitis by enhancing Treg cell stability and function

British journal of pharmacology

5.49

2018

RNA-seq

49

Human cell line

human

FBXL10 contributes to the development of diffuse large B-cell lymphoma by epigenetically enhancing ERK1/2 signaling pathway

Cell death & disease

5.965

2018

RNA-seq

50

Arabidopsis thaliana

plant

Arabidopsis thaliana ACS8 plays a crucial role in the early biosynthesis of ethylene elicited by Cu2+ ions

JOURNAL OF CELL SCIENCE

4.431

2018

RNA-seq

51

Mouse

animal

Dual extra-retinal origins of microglia in the model of retinal microglia repopulation

Cell Discovery

2018

RNA-Seq

52

human

human

Overcoming erlotinib resistance in EGFR mutation-positive lung adenocarcinomas through repression of phosphoglycerate dehydrogenase

Theranostics

8.766

2018

RNA-Seq

53

Pea

animal

A small set of differentially expressed genes was associated with two color morphs in natural populations of the pea aphid Acyrthosiphon pisum

Gene

2.415

2018

RNA-Seq

54

human

human

Selenite and methylseleninic acid epigenetically affects distinct gene sets in myeloid leukemia: A genome wide epigenetic analysis

Free Radical Biology and Medicine

5.606

2018

RNA-Seq

55

Mouse

animal

Repopulated microglia are solely derived from the proliferation of residual microglia after acute depletion

Nature Neuroscience

17.839

2018

RNA-Seq

56

metagenome

microorganism

A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses

Microbiome

8.496

2018

metagenome

57

tomato

plant

Transcriptome resequencing analysis of the responses of Ty5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars

PeerJ

2.17

2018

RNA-seq

58

metagenome

microorganism

Efficacy and safety of faecal microbiota transplantation in patients with psoriatic arthritis: protocol for a 6-month, double-blind, randomised, placebo-controlled trial

BMJ OPEN

2.369

2018

metagenome

59

Human cell line

human

Autophagy mediates glucose starvation-induced glioblastoma cell quiescence and chemoresistance through coordinating cell metabolism, cell cycle, and survival

Cell death & disease

5.965

2018

RNA-seq

60

Mouse

animal

KRAB-type zinc-finger proteins PITA and PISA specifically regulate p53-dependent glycolysis and mitochondrial respiration

Cell research

15.606

2018

RNA-seq

61

Mouse

animal

The LIS1/NDE1 Complex Is Essential for FGF Signaling by Regulating FGF Receptor Intracellular Trafficking

Cell Reports

8.282

2018

RNA-Seq

62

plant

plant

A guide to sequence your favorite plant genomes

Applications in plant sciences

1.49

2018

Review

63

Human gastric cancer

human

The lncRNA MACC1-AS1 promotes gastric cancer cell metabolic plasticity via AMPK/Lin28 mediated mRNA stability of MACC1

Molecular Cancer

6.204

2018

RNA-seq

64

Rhizopus

microorganism

Comparative genome-wide analysis of extracellular small RNAs from the mucormycosis pathogen Rhizopus delemar

Scientific Reports

4.259

2018

Small RNA

65

Thyroid cancer

human

TBX3 promotes proliferation of papillary thyroid carcinoma cells through facilitating PRC2-mediated p57KIP2 repression

Oncogene

7.519

2018

RNA-seq

66

Gastric cancer

human

Silkworm Pupa Protein Hydrolysate Induces Mitochondria-Dependent Apoptosis and S Phase Cell Cycle Arrest in Human Gastric Cancer SGC-7901 Cells

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

3.226

2018

RNA-seq

67

Arabidopsis thaliana

plant

Hydrogen peroxide positively regulates brassinosteroid signaling through oxidation of the BRASSINAZOLE-RESISTANT1 transcription factor

Nature Communications

12.124

2018

RNA-seq

68

Human cell line

human

Small molecules capable of activating DNA methylationrepressed genes targeted by the p38 mitogen-activated protein kinase pathway

Journal of Biological Chemistry

4.125

2018

RNA-seq

69

Mouse

animal

PAF-Myc-Controlled Cell Stemness Is Required for Intestinal Regeneration and Tumorigenesis

Developmental cell

9.174

2018

RNA-seq

70

leukemia

human

Leukemia cell-derived microvesicles induce T cell exhaustion via miRNA delivery

OncoImmunology

7.719

2018

RNA-seq

71

Saccharomyces cerevisiae

microorganism

RNA-Seq analysis of global transcriptomic changes suggests a roles for the MAPK pathway and carbon metabolism in cell wall maintenance in a Saccharomyces cerevisiae FKS1 mutant

Biochemical and Biophysical Research Communications

2.466

2018

Transcriptome Sequencing

72

kava

plant

The biosynthetic origin of psychoactive kavalactones in kava

bioRxiv

2018

Transcriptome Sequencing

73

Listeria

microorganism

Identification and Characterization of als Genes Involved in D-Allose Metabolism in Lineage II Strain of Listeria monocytogenes

Frontiers in Microbiology

4.076

2018

RNA-seq

74

Cupriavidus

microorganism

In Situ Lignin Bioconversion Promotes Complete Carbohydrate Conversion of Rice Straw by Cupriavidus basilensis B-8

ACS Sustainable Chemistry & Engineering

5.95

2018

RNA-seq

75

Rat

animal

Cranial Irradiation Induces Hypothalamic Injury and Late-Onset Metabolic Disturbances in Juvenile Female Rats

DEVELOPMENTAL NEUROSCIENCE

3.03

2018

RNA-seq

76

human

human

Anti?fbrogenic Potential of Mesenchymal Stromal Cells in Treating Fibrosis in Crohns Disease

Digestive Diseases and Sciences

2.875

2018

RNA-seq

77

human

human

Quality Control of Next-generation Sequencing-based In vitro Diagnostic Test for Onco-relevant Mutations Using Multiplex Reference Materials in Plasma

Journal of Cancer

2.916

2018

Review

78

psoriasis

human

An Interleukin-25-Mediated Autoregulatory Circuit in Keratinocytes Plays a Pivotal Role in Psoriatic Skin Inflammation

Immunity

22.845

2018

RNA-seq

79

Human cell line

human

Roles of the CSE1L-mediated nuclear import pathway in epigenetic silencing

PNAS

9.661

2018

RNA-seq

80

Wheat rhizosphere

microorganism

The Catabolite Repressor/Activator Cra Is a Bridge Connecting Carbon Metabolism and Host Colonization in the Plant Drought Resistance-Promoting Bacterium Pantoea alhagi LTYR-11Z

Applied and Environmental Microbiology

3.807

2018

RNA-seq

81

human

human

Efficient and unique co-barcoding of second-generation sequencing reads from long DNA molecules enabling cost effective and accurate sequencing, haplotyping, and de novo assembly

GENOME RESEARCH

11.922

2019

stLFR

82

Corn worm

animal

Transcriptome profiling reveals differential gene expression of detoxification enzymes in Sitophilus zeamais responding to terpinen-4-ol fumigation

Pesticide Biochemistry and Physiology

2.59

2018

Transcriptome Sequencing

83

human

human

Identification of a mutL?homolog 1 mutation via whole?exome sequencing in a Chinese family with Gardner syndrome

Molecular Medicine Reports

1.692

2018

WES

84

E.coli

microorganism

Differential gene expression in Escherichia coli during aerosolization from liquid suspension

Applied Microbiology and Biotechnology

3.42

2018

RNA-seq

85

Rat intestine

animal

A gene catalogue of the Sprague-Dawley rat gut metagenome

GigaScience

7.267

2018

metagenome

86

Dracaena cambodiana

plant

Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered Vulnerable in Southeast Asia

Mitochondrial DNA Part B

0.488

2018

plastome Sequencing

87

Human exosomes

human

Variants in EXOSC9 Disrupt the RNA Exosome and Result in Cerebellar Atrophy with Spinal Motor Neuronopathy

The American Journal of Human Genetics

9.025

2018

RNA-seq

88

Oyster

animal

The Molecular Mechanism Underlying Pro-apoptotic Role of Hemocytes Specific Transcriptional Factor Lhx9 in Crassostrea hongkongensis

Frontiers in Physiology

4.134

2018

RNA-seq

89

Arabidopsis thaliana

plant

Overexpression of VaWRKY14 increases drought tolerance in Arabidopsis by modulating the expression of stress-related genes

Plant Cell Reports

2.869

2018

RNA-seq

90

Salt mustard

plant

Compositional and transcriptomic analysis associated with cuticle lipid production on rosette and inflorescence stem leaves in the extremophyte Thellungiella salsuginea

physiologia plantarum

3.3

2018

RNA-seq

91

yeast

microorganism

Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods

Nature Communications

12.124

2018

WGS

92

Mouse

animal

Global expression profiling and pathway analysis of mouse mammary tumor reveals strain and stage specific dysregulated pathways in breast cancer progression

Cell Cycle

3.53

2018

RNA-seq

93

human

human

STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection

Nature Communications

12.124

2018

RNA-seq

94

Rice

plant

DDM1 represses noncoding RNA expression and RNA-directed DNA methylation in heterochromatin

Plant Physiology

6.456

2018

Small RNA

95

Rhesus monkey

animal

Genetic screening and multipotency in rhesus monkey haploid neural progenitor cells

Development

5.843

2018

RNA-seq

96

Human cleft lip

human

A novel PTCH1 mutation underlies nonsyndromic cleft lip and/or palate in a Han Chinese family

oral diseases

2.01

2018

WES

97

Sogatella furcifera

animal

Comparative transcriptome analysis of Sogatella furcifera (Horváth) exposed to different insecticides

Scientific Reports

4.259

2018

Transcriptome Sequencing

98

Infective endocarditis

human

Identification of pathogens in culture-negative infective endocarditis with metagenomic analysis

Annals of Clinical Microbiology and Antimicrobials

3.155

2018

metagenome

99

human

human

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

BMC Genomics

3.73

2018

WGS&PCR-Free

100

Human cell line

human

Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy

Journal of Pharmacology and Experimental Therapeutics

3.867

2018

RNA-seq&Small RNA

101

Cynoglossus semilaevis

animal

Transcriptome profiling of immune-responsive genes in the intestine of Cynoglossus semilaevis Günther challenged with Shewanella algae

Fish & Shellfish Immunology

3.148

2018

RNA-seq

102

tomato

plant

Expression of grape ACS1 in tomato decreases ethylene and alters the balance between auxin and ethylene during shoot and root formation

Journal of Plant Physiology

3.121

2018

RNA-seq

103

Ovarian cancer

human

C/EBPβ enhances platinum resistance of ovarian cancer cells by reprogramming H3K79 methylation

Nature Communications

12.124

2018

WES

104

Mycobacterium

microorganism

Diagnosis of local hepatic tuberculosis through next-generation sequencing: Smarter, faster and better

Clinics and Research in Hepatology and Gastroenterology

2.623

2018

Pathogen detection

105

cucumber

plant

Differential Gene Expression Caused by the F and M Loci Provides Insight Into Ethylene-Mediated Female Flower Differentiation in Cucumber

Front. Plant Sci.

3.678

2018

RNA-seq

106

Spontaneous preterm birth

human

Whole exome sequencing reveals HSPA1L as a genetic risk factor for spontaneous preterm birth

PLOS.Genetics

5.54

2018

WES

107

human

human

The epigenetic modifier PBRM1 restricts the basal activity of the innate immune system by repressing retinoic acid-inducible gene-I-like receptor signalling and is a potential prognostic biomarker for colon cancer.

J Pathol

6.253

2018

RNA-seq

108

Human cell line

human

Mutually exclusive acetylation and ubiquitylation of the splicing factor SRSF5 control tumor growth

Nature Communications

12.124

2018

RNA-Seq

109

Human interstitial cells

human

Differential and Interactive Effects of Substrate Topography and Chemistry on Human Mesenchymal Stem Cell Gene Expression

International Journal of Molecular Sciences.

3.687

2018

RNA-Seq

110

Arabidopsis thaliana

plant

Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants

Plant Methods

4.269

2018

RNA-seq

111

Rice

plant

Modulating plant growthmetabolism coordination for sustainable agriculture

Nature

41.577

2018

RNA-Seq&ChIP-Seq

112

Mouse

animal

Menin Deficiency Leads to Depressive-like Behaviors in Mice by Modulating Astrocyte-Mediated Neuroinflammation

Neuron

14.318

2018

RNA-Seq

113

human

human

3 Branch ligation: a novel method to ligate non-complementary DNA to recessed or internal 30OH ends in DNA or RNA

DNA RES

5.404

2018

stLFR

114

human

human

Validation of combinatorial probeanchor ligation-based sequencing as non-invasive prenatal test for trisomy at a central laboratory

Ultrasound in Obstetrics & Gynecology

4.71

2017

NIFTY

115

plant

plant

10KP: A Phylodiverse Genome Sequencing Plan

GigaScience

7.267

2018

COMMENTARY

116

fish

animal

Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression

GigaScience

7.267

2018

Hi-C library

117

tomato

plant

Comparative Transcriptome Profiling of Two Tomato Genotypes in Response to Potassium-Deficiency Stress

International Journal of Molecular Sciences

3.687

2018

RNA-Seq

118

human

human

The microRNA-29/PGC1α regulatory axis is critical for metabolic control of cardiac function

PLOS ONE

3.057

2018

Small RNA

119

human

human

The metagenome of the female upper reproductive tract

GigaScience

7.267

2018

metagenome

120

virus

human

clinical application of respiratory virus detection by metagenomic next generation sequencing

Chinese Journal of Nosocomiology(china)

2018

metagenome

121

Alfalfa

plant

Multiple Regulatory Networks Are Activated during Cold Stress in Medicago sativa L

International Journal of Molecular Sciences

3.687

2018

RNA-Seq

122

Rat

animal

Hippocampal gene expression profiling in a rat model of functional constipation reveals abnormal expression genes associated with cognitive function

Neuroscience Letters

2.18

2018

RNA-Seq

123

human

human

Advanced Whole-Genome Sequencing and Analysis of Fetal Genomes from Amniotic Fluid

Clinical Chemistry

8.636

2018

PGS

124

human

human

Isolation and whole genome sequencing of fetal cells from maternal blood towards the ultimate noninvasive prenatal testing

PRENATAL DIAGNOSIS

2.523

2017

PGS

125

human

human

Multiplex Cell-Free DNA Reference Materials for Quality Control of Next-Generation Sequencing-Based In Vitro Diagnostic Tests of Colorectal Cancer Tolerance

Journal of Cancer

2.916

2018

cfDNA

126

Mouse

animal

Glucocorticoid receptor in stromal cells is essential for glucocorticoid-mediated suppression of inflammation in arthritis

Annals of the Rheumatic Diseases

12.38

2018

RNA-Seq

127

Human cell line

human

The epigenetic modifer PBRM1 restricts the basal activity of the innate immune system by repressing retinoic acid-inducible gene-I-like receptor signalling and is a potential prognostic biomarker for colon cancer

Journal of Pathology

6.253

2018

RNA-Seq

128

Mouse

animal

Polysaccharides extracted from Phellinus linteus ameliorate high-fat high-fructose diet induced insulin resistance in mice

Carbohydrate Polymers

5.158

2018

RNA-Seq

129

Zebrafish

animal

Transcriptome analysis reveals functional roles of nacreous protein N16 in prednisolone-induced osteoporotic zebrafish

International Journal of Biological Macromolecules

3.909

2018

RNA-Seq

130

peanut

plant

Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

BMC genomics

3.73

2018

RNA-Seq

131

Alfalfa

plant

Comparative Transcriptomic and Physiological Analyses of Medicago sativa L. Indicates that Multiple Regulatory Networks Are Activated during Continuous ABA Treatment

Int J Mol Sci.

3.687

2018

RNA-Seq

132

Oyster

animal

Analysis of in situ Transcriptomes Reveals Divergent Adaptive Response to Hyper- and Hypo-Salinity in the Hong Kong Oyster, Crassostrea hongkongensis

Front. Physiol

3.394

2018

RNA-Seq

133

Heortia vitessoides

animal

Candidate olfactory genes identified in Heortia vitessoides(Lepidoptera: Crambidae) by antennal transcriptome analysis

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics

2.913

2018

Transcriptome Sequencing

134

barley

plant

Transcriptomic comparison of two barley genotypes differing in arsenic tolerance exposed to arsenate and phosphate treatments

Plant Physiology and Biochemistry

2.718

2018

RNA-Seq

135

alveolar macrophages

animal

Transcriptome of porcine alveolar macrophages activated by interferon-gamma and lipopolysaccharide

Biochemical and Biophysical Research Communications

2.559

2018

RNA-Seq

136

Salt grass

plant

Comparative transcriptome analysis of genes involved in Na+ transport in the leaves of halophyte Halogeton glomeratus

Gene

2.498

2018

RNA-seq

137

duck

animal

RNA-Seq analysis of duck embryo fibroblast cell gene expression during the early stage of egg drop syndrome virus infection

Poultry Science

2.216

2018

RNA-Seq

138

Heortia vitessoides

animal

De novo assembly and identification of antennal transcriptome reveals an olfactory system in Heortia vitessoides (Lepidoptera: Crambidae)

PeerJ

2.17

2017

Transcriptome Sequencing

139

Jujube

plant

Combination of iTRAQ proteomics and RNA-seq transcriptomics reveals jasmonate-related-metabolisms central regulation during the process of Jujube witches broom recovery by tetracycline treatment

Scientia Horticulturae

1.76

2018

RNA-seq

140

human

human

The application of NIPT using combinatorial probe-anchor synthesis to identify sex chromosomal aneuploidies (SCAs) in a cohort of 570 pregnancies.

Mol Cytogenet.

1.167

2018

NIFTY

141

Cell line

human

A new massively parallel nanoball sequencing platform for whole exome research

BMC Bioinformatics

2.448

2019

WES

142

Mouse embryo Stem cells&human K562 cells

animal

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

GENOME BIOLOGY

13.214

2019

scRNA-Seq

143

Purple cabbage, kale

plant

Maintenance of grafting-induced epigenetic variations in the asexual progeny of Brassica oleracea and B juncea chimera

Plant J

5.97

2018

Small RNA

144

Exosomes

human

Exosomes derived from preadipocytes improve osteogenic differentiation, potentially via reduced miR?223 expression

Molecular Medicine Reports

1.692

2018

RNA-Seq

145

Caenorhabditis elegans

animal

A Persistence Detector for Metabolic Network Rewiring in an Animal

CELL REP

8.282

2019

RNA-Seq

146

human

human

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos

Nature Communications

12.124

2019

ATAC-seq&LiCAT-seq

147

Gram-positive bacteria

microorganism

Functional analysis of Leifsonia xyli subsp xyli membrane protein gene Lxx18460 (anti-sigma K)

BMC Microbiol

2.644

2019

RNA-Seq

148

Celastrus angulatus maxim

plant

De novo leaf and root transcriptome analysis to explore biosynthetic pathway of Celangulin V in Celastrus angulatus maxim

BMC GENOMICS

3.729

2019

RNA-Seq

149

human

human

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

Nature Communications

12.124

2019

scCAT-seq

150

Nematode

microorganism

The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans

PLOS GENET

6.1

2019

RNA-Seq&ChIP-seq

151

Mouse

animal

Organic cation transporter 3 (Oct3) is a distinct catecholamines clearance route in adipocytes mediating the beiging of white adipose tissue

PLOS BIOL

9.797

2019

RNA-Seq

152

Rice

plant

The basic helixloophelix transcription factor, OsPIL15, regulates grain size via directly targeting a purine permease gene OsPUP7 in rice

PLANT BIOTECHNOL J

7.443

2019

RNA-Seq

153

Brassica

plant

Chromosome level comparative analysis of Brassica genomes

PLANT MOL BIOL

3.356

2019

Hi-C library

154

human

human

CINP is a novel cofactor of KLF5 required for its role in the promotion of cell proliferation, survival and tumor growth

INT J CANCER

6.513

2019

RNA-Seq

155

human

human

Knockdown of KDM2A inhibits proliferation associated with TGF-β expression in HEK293T cell

MOL CELL BIOL

4.398

2019

RNA-Seq

156

human

human

Toxoplasma gondii ROP17 inhibits the innate immune response of HEK293T cells to promote its survival

PARASITOL RES

2.329

2019

RNA-Seq

157

tomato

plant

Overexpression of the KNOX gene Tkn4 affects pollen development and confers sensitivity to gibberellin and auxin in tomato

J PLANT BIOL

1.437

2019

RNA-Seq

158

tomato

plant

A tomato Bbox protein SlBBX20 modulates carotenoid biosynthesis by directly activating PHYTOENE SYNTHASE 1, and is targeted for 26S proteasomemediated degradation

New Phytologist

7.33

2019

RNA-Seq

159

human

human

Frequency of mutations in 21 hereditary breast and ovarian cancer susceptibility genes among high-risk Chinese individuals

bioRxiv

2019

capture

160

Rice

plant

Expression of Maize MADS Transcription Factor ZmES22 Negatively Modulates Starch Accumulation in Rice Endosperm

INT J MOL SCI

3.226

2019

RNA-Seq

161

human

human

MicroRNA profiling from dried blood samples

Critical Reviews in Clinical Laboratory Sciences

6.481

2019

Small RNA

162

Arabidopsis thaliana

plant

Functional analysis for domains of maize PPR protein EMP5 in RNA editing and plant development in Arabidopsis

PLANT GROWTH REGUL

2.646

2019

RNA-Seq

163

human

human

Human epidermal growth factor receptor 2 amplification as a biomarker for treatment in patients with lymph node?metastatic penoscrotal extramammary Paget's disease

Oncology  Letters

1.664

2019

WGS

164

Grouper

animal

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

Molecular Ecology Resources

7.059

2019

RNA-Seq&ATAC-seq

165

Amphioxus

animal

Genome-wide transcriptional response of microRNAs to the benzo(a)pyrene stresD168:D178s in amphioxus Branchiostoma belcheri

CHEMOSPHERE

4.208

2019

Small RNA

166

Zebrafish

animal

Microcystin-LR exposure induced nephrotoxicity by triggering apoptosis in female zebrafish

CHEMOSPHERE

4.208

2019

RNA-Seq

167

human

human

Genomic sequencing and editing revealed the GRM8 signaling pathway as potential therapeutic targets of squamous cell lung cancer

CANCER LETT

6.375

2019

WGS&WES

168

human

human

Nonobese subjects of Bacteroides and Prevotella enterotypes responded differentially to calorie restriction intervention

bioRxiv

2019

metagenome

169

Alfalfa

plant

Full-length transcript sequencing and comparative transcriptomic analysis to evaluate the contribution of osmotic and ionic stress components towards salinity tolerance in the roots of cultivated alfalfa (Medicago sativa L)

BMC Plant Biology

3.964

2019

RNA-Seq

170

human

human

Genome-wide identification of protein binding sites on RNAs in mammalian cells

Biochemical and Biophysical Research Communications

2.466

2019

RPBS-Cap

171

Amphioxus

animal

Genome-wide gene expression analysis reveals novel insights into the response to nitrite stress in gills of Branchiostoma belcheri

CHEMOSPHERE

4.208

2019

RNA-Seq

172

Mouse

animal

Loss or oncogenic mutation of DROSHA impairs kidney development and function, but is not sufficient for Wilms tumor formation

INT J CANCER

6.513

2018

RNA-Seq

173

Pathogen

microorganism

Pathogens in Patients with Granulomatous lobular mastitis

INT J INFECT DIS

2.532

2019

Pathogen detection

174

human

human

The identification of a transthyretin variant p.D38G in a Chinese family with early-onset leptomeningeal amyloidosis

Journal of Neurology

3.783

2019

WES

175

bacterial

microorganism

MALDI-TOF Characterization of Protein Expression Mutation During Morphological Changes of Bacteria Under the Impact of Antibiotics

ANAL CHEM

6.32

2019

RNA-Seq

176

Herpes Simplex Viruses

microorganism

Identification of Putative UL54 (ICP27) Transcription Regulatory Sequences Binding to Oct-1, v-Myb, Pax-6 and Hairy in Herpes Simplex Viruses

Journal of Cancer

2.916

2019

Pathogen detection

177

Tropical fruit of Indonesia

plant

Datasets for genome assembly of six underutilized Indonesian fruits

Data in Brief

2019

WGS

178

Brassica

plant

The complete plastid genomes of four species from Brassicales

MITOCHONDR DNA part B

0.488

2019

plastome Sequencing

179

insect

animal

Candidate olfactory genes identified in Heortia vitessoides (Lepidoptera: Crambidae) by antennal transcriptome analysis

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics

2.857

2019

RNA-seq

180

virus

microorganism

Genome comparison of African swine fever virus China/2018/AnhuiXCGQ strain and related European p72 Genotype II strains

TRANSBOUND EMERG DIS

3.585

2019

Pathogen detection

181

Sea worm family

animal

Complete mitogenome of a Baltic Sea specimen of the non-indigenous polychaete Marenzelleria neglecta

MITOCHONDR DNA part B

0.488

2019

WGS

182

metagenome

microorganism

Metagenomic next-generation sequencing contribution in identifying prosthetic joint infection due to Parvimonas micra: a case report

journal of Bone and Joint Infection

2019

Pathogen detection

183

White whale

animal

The first chromosomelevel genome for a marine mammal as a resource to study ecology and evolution

Molecular Ecology Resources

7.332

2019

WGS

184

metagenome

microorganism

The vagino-cervical microbiome as a woman's life history

bioRxiv

2019

metagenome

185

Danionella translucida

animal

Hybrid genome assembly and annotation of Danionella translucida

bioRxiv

2019

Transcriptome Sequencing

186

corn

plant

Molecular Mechanisms Underlying Increase in Lysine Content of Waxy Maize through the Introgression of the opaque2 Allele

INT J MOL SCI

3.226

2019

RNA-Seq

187

penguin

animal

Mitogenomes uncover extinct penguin taxa and reveal island formation as a key driver of speciation

Molecular Biology and Evolution

6.202

2019

WGS

188

metagenome

microorganism

The biodiversity Composition of Microbiome in Ovarian Carcinoma Patients

Scientific Reports

4.259

2019

RNA-Seq

189

apple

plant

Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

BMC genomics

3.73

2019

RNA-Seq

190

tomato

plant

SlMYB75, an MYB-type transcription factor,promotes anthocyanin accumulation and enhances volatile aroma production in tomato fruits

Horticulture Research

3.6

2019

RNA-Seq

191

Mouse

animal

The effects of perfluorooctanoate on high fat diet induced non-alcoholic fatty liver disease in mice

Toxicology

3.582

2019

RNA-Seq

192

plant

Molecular digitization of a botanical garden: high-depth whole genome sequencing of 689 vascular plant species from the Ruili Botanical Garden

GigaScience

7.267

2019

WGS

193

American ginseng

plant

Characterization of the complete chloroplast genome of American ginseng, Panax quinquefolius L.

Mitochondrial DNA Part B

0.488

2019

chloroplast Sequencing

194

Nanmu

plant

Characterization of the complete chloroplast genome of the Phoebe zhennan S. Lee

Mitochondrial DNA Part B

0.488

2019

chloroplast Sequencing

195

eggplant

plant

Comparative transcriptome analysis reveals K+ transporter gene contributing to salt tolerance in eggplant

BMC Plant Biology

3.964

2019

RNA-Seq

196

Mouse

animal

Eradication of glioblastoma by immuno-virotherapy with a retargeted oncolytic HSV in a preclinical model

Oncogene

7.519

2019

RNA-Seq

197

Bradysia odoriphaga

animal

Genome-wide analysis of developmental stage-specific transcriptome in Bradysia odoriphaga

Comparative Biochemistry and Physiology D-Genomics & Proteomics

2.857

2019

RNA-Seq

198

human

human

A Novel Heterozygous Mutation of the COL4A3 Gene Causes a Peculiar Phenotype without Hematuria and Renal Function Impairment in a Chinese Family

DISEASE MARKERS

2.348

2019

WES

199

human

human

Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA sequencing

bioRxiv

2019

scRNA-Seq

200

Rat

animal

Anti-senescence role of heterozygous fumarate hydratase gene knockout in rat lung fibroblasts in vitro

Aging

5.179

2019

RNA-Seq

201

Lactobacillus

microorganism

Two Strains of Lactobacilli Effectively Decrease the Colonization of VRE in a Mouse Model

Frontiers in cellular and  Infection Microbiology

3.52

2019

RNA-Seq

202

dog

animal

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival

bioRxiv

2019

RNA-Seq

203

human

human

Diminished OPA1 expression and impaired mitochondrial morphology and homeostasis in Aprataxin-deficient cells

Nucleic Acids Research

10.162

2019

RNA-Seq

204

human

human

Specific Decrease in B-Cell-Derived Extracellular Vesicles Enhances Post-Chemotherapeutic CD8+ T Cell Responses

Immunity

22.845

2019

RNA-Seq

205

Mouse

animal

Ex Vivo Hepatocyte Reprograming Promotes HomologyDirected DNA Repair to Correct Metabolic Disease in Mice After Transplantation

hepatology communications

2019

RNA-Seq

206

Rodents

animal

Hepatic IRF6 alleviates liver steatosis and metabolic disorder by transcriptionally suppressing PPARγ

hepatology

13.246

2019

RNA-Seq&ChIP-Seq

207

Neisseria gonorrhoeae

microorganism

Identification and expression analysis of ceftriaxone resistance-related genes in Neisseria gonorrhoeae integrating RNA-Seq data and qRT-PCR validation

Journal of Global Antimicrobial Resistance

1.276

2019

RNA-Seq

208

human

human

Identification of a Heterozygous Mutation in the TGFBI Gene in a Hui-Chinese Family with Corneal Dystrophy

Journal of Ophthalmology

1.712

2019

RNA-Seq

209

Rice

plant

OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes

rice

3.739

2019

RNA-Seq

210

Arabidopsis thaliana

plant

The R2R3-MYB transcription factor MYB49 regulates cadmium accumulation

Plant physiology

6.456

2019

RNA-Seq

211

oilseed rape

plant

Transcriptome analysis of the irregular shape of shoot apical meristem in dt (dou tou) mutant of Brassica napus L.

Molecular Breeding

2.465

2019

RNA-Seq

212

potato

plant

Sequencing and characterization the complete chloroplast genome of the potato, Solanum tuberosum L.

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

213

human

human

Precisely controlling endogenous protein dosage in hPSCs and derivatives to model FOXG1 syndrome

Nature Communications

12.124

2019

RNA-Seq

214

Mouse

animal

Transcriptome Profile in Hippocampus During Acute Inflammatory Response to Surgery: Toward Early Stage of PND

Frontiers in Immunology

6.429

2019

RNA-Seq

215

Dandelion

plant

Dandelion polysaccharides exert anticancer effect on Hepatocellular carcinoma by inhibiting PI3K/AKT/mTOR pathway and enhancing immune response

Journal of Functional Foods

3.144

2019

RNA-Seq

216

peach

plant

A single nucleotide mutation in GID1c disrupts its interaction with DELLA1 and causes a GAinsensitive dwarf phenotype in peach

PLANT BIOTECHNOLOGY JOURNAL

7.443

2019

RNA-Seq

217

Nude mouse

animal

RREB1-induced upregulation of the lncRNA AGAP2-AS1 regulates the proliferation and migration of pancreatic cancer partly through suppressing ANKRD1 and ANGPTL4

Cell Death & Disease

5.965

2019

RNA-Seq

218

human

human

CCR7 Chemokine Receptor-Inducible lnc-Dpf3 Restrains Dendritic Cell Migration by Inhibiting HIF-1α-Mediated Glycolysis

Immunity

22.845

2019

RNA-Seq

219

Mouse

animal

Intestinal transcriptional profling reveals fava bean-induced immune response in DBA/1 mice

Biological Research

1.692

2019

RNA-Seq

220

Anabas testudineus

animal

Transcriptomic analysis of Anabas testudineus and its defensive mechanisms in response to persistent organic pollutants exposure

SCIENCE OF THE TOTAL ENVIRONMENT

4.9

2019

RNA-Seq

221

Yak

animal

Nutritional Interventions Improved Rumen Functions and Promoted Compensatory Growth of Growth-Retarded Yaks as Revealed by Integrated Transcripts and Microbiome Analyses

Frontiers in microbiology

4.076

2019

RNA-Seq

222

human

human

The proinflammatory cytokine TNF-α induces DNA demethylationdependent and independent activation of interleukin-32 expression

Journal of Biological Chemistry

4.125

2019

RNA-Seq

223

Diatom

plant

Complete chloroplast genome of the diatom Skeletonema pseudocostatum from the Western Mediterranean coast of Algeria

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

224

human

human

COL1A2 p.Gly1066Val variant identified in a Han Chinese family with osteogenesis imperfecta type I

molecular genetics&genomics

2.979

2019

WES

225

human

human

Establishment of a human embryonic stem cell-based liver differentiation model for hepatotoxicity evaluations

Ecotoxicology and Environmental Safety

3.743

2019

RNA-Seq

226

mouse

animal

Germline deletion of Cdyl causes teratozoospermia and progressive infertility in male mice

Cell Death & Disease

5.965

2019

RNA-seq

227

human

human

Novel GLI3 mutations in Chinese patients with non-syndromic post-axial polydactyly

CURRENT MOLECULAR MEDICINE

2.345

2019

WES

228

Horseshoe

plant

RNA-Seq analysis of gene expression during the yellowing developmental process of fresh-cut Chinese water chestnuts

Scientia Horticulturae

1.624

2019

RNA-seq

229

fish

animal

Hypoxia causes transgenerational impairment of ovarian development and hatching success in fish

ENVIRONMENTAL SCIENCE & TECHNOLOGY

6.198

2019

RNA-seq

230

human

human

Integrated lipidomics and transcriptomics characterization upon aging related changes of lipid species and pathways in human bone marrow mesenchymal stem cells

JOURNAL OF PROTEOME RESEARCH

4.268

2019

RNA-seq

231

mouse

animal

Toxicity Induced by Zirconia Oxide Nanoparticles on Various Organs After Intravenous Administration in Rats

Journal of Biomedical Nanotechnology

4.521

2019

RNA-seq

232

human

human

Comparative analysis of novel MGISEQ-2000 sequencing platform vs Illumina HiSeq 2500 for whole-genome sequencing

bioRxiv

2019

WGS

233

human

human

Nucleoporin Seh1 Interacts with Olig2/Brd7 to Promote Oligodendrocyte Differentiation and Myelination

Neuron

14.318

2019

RNA-seq

234

human

human

Generation of Highly Biomimetic Quality Control Materials for Noninvasive Prenatal Testing Based on Enzymatic Digestion of Matched MotherChild Cell Lines

CLINICAL CHEMISTRY

8.008

2019

NIFTY

235

Salvia

plant

Comparative transcriptomic analysis provides insights into the development of a Salvia splendens Ker-Gawler mutant, SX919M

PLoS One

2.806

2019

RNA-seq

236

mouse

animal

Absence of GdX/UBL4A Protects against Inflammatory Diseases by Regulating NF-кB Signaling in Macrophages and Dendritic Cells

Theranostics

8.712

2019

RNA-seq

237

mouse

animal

Hypoxic BMSC-derived exosomal miRNAs promote metastasis of lung cancer cells via STAT3-induced EMT

Molecular Cancer

6.204

2019

RNA-seq

238

Microalgae

plant

Transcriptomic and lipidomic analysis of an EPA-containing Nannochloropsis sp. PJ12 in response to nitrogen deprivation

Scientific Reports

4.259

2019

RNA-seq

239

human

human

Collaborative ISL1/GATA3 interaction in controlling neuroblastoma oncogenic pathways overlapping with but distinct from MYCN

Theranostics

8.712

2019

RNA-seq

240

Arabidopsis thaliana

plant

Comparative physiological and transcriptomic analyses reveal the toxic effects of ZnO nanoparticles on plant growth

ENVIRONMENTAL SCIENCE & TECHNOLOGY

6.198

2019

RNA-seq

241

Spider Mite

animal

Identification of Saliva Proteins of the Spider Mite Tetranychus evansi by Transcriptome and LCMS/MS Analyses

PROTEOMICS

4.041

2018

RNA-seq

242

Mosquito

animal

Mosquito Small RNA Responses to West Nile and Insect-Specific Virus Infections in Aedes and Culex Mosquito Cells

viruses

3.761

2019

Small RNA

243

Rose yellow mosaic virus

microorganism

Complete genome sequence of a novel member of the family Potyviridae isolated from Phellodendron amurense Rupr. in Liaoning, China

ARCHIVES OF VIROLOGY

2.058

2019

Small RNA

244

mouse

animal

An ATAC-seq atlas of chromatin accessibility in mouse tissues

Scientific Data

5.305

2019

ATAC-seq

245

metagenome

microorganism

Life history recorded in the vagino-cervical microbiome

bioRxiv

2019

metagenome

246

human

human

MicroRNA signature of air pollution exposureinduced congenital defects

JOURNAL OF CELLULAR PHYSIOLOGY

4.08

2019

Small RNA

247

human

human

Decitabine shows synergistic effects with arsenic trioxide against myelodysplastic syndrome cells via endoplasmic reticulum stress-related apoptosis

Journal of Investigative Medicine

1.943

2019

RNA-seq

248

human

human

Panel-based NGS reveals disease-causing mutations in hearing loss patients using BGISEQ-500 platform

MEDICINE

1.803

2019

capture

249

human

human

Super-enhancers: novel target for pancreatic ductal adenocarcinoma

oncotarget

5.168

2019

RNA-Seq&ChIP-Seq

250

bacterial

microorganism

An Osmoregulatory Mechanism Operating through OmpR and LrhA Controls the Motile-Sessile Switch in the Plant Growth-Promoting Bacterium Pantoea alhagi

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

3.807

2019

RNA-Seq

251

mouse

animal

Metabolic Profiling of Tumors, Sera, and Skeletal Muscles from an Orthotopic Murine Model of Gastric Cancer Associated-Cachexia

JOURNAL OF PROTEOME RESEARCH

4.268

2019

RNA-Seq

252

Human cell line

human

Targeting super-enhancer-driven oncogenic transcription by CDK7 inhibition in anaplastic thyroid cancer

THYROID

5.515

2019

RNA-Seq&ChIP-Seq

253

Caenorhabditis elegans

animal

Gene-level quantitative trait mapping in an expanded C. elegans multiparent experimental evolution panel

bioRxiv

2019

WGS

254

tomato

plant

Characterization the complete chloroplast genome of the tomato (Solanum lycopersicum L.) from China

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

255

Pathogen

microorganism

Highthroughput identification and diagnostics of pathogens and pests: Overview and practical recommendations

Molecular Ecology Resources

7.332

2018

Pathogen detection

256

porcine sapelovirus

microorganism

Characterization and epidemiological survey of porcine sapelovirus in China

Veterinary Microbiology

2.628

2019

Pathogen detection

257

Salmonella enteritidis

microorganism

Increased growth rate and amikacin resistance of Salmonella enteritidis after onemonth spaceflight on Chinas Shenzhou11 spacecraft

Microbiologyopen

2.747

2019

Pathogen detection

258

Fungus

microorganism

Intercellular communication is required for trap formation in the nematode-trapping fungus Duddingtonia flagrans

PLOS.Genetics

5.54

2019

RNA-Seq

259

Human cell line

human

Next-Generation Sequencing Analysis of mRNA Profile in Cisplatin-Resistant Gastric Cancer Cell Line SGC7901

Med Sci Monit

1.585

2019

RNA-Seq

260

Verticillium dahliae

microorganism

Genomewide Transcriptome Profiles Reveal How Bacillus subtilis Lipopeptides Inhibit Microsclerotia Formation in Verticillium dahliae

MOLECULAR PLANT-MICROBE INTERACTIONS

4.332

2019

RNA-Seq

261

Human cell line

human

Human UTP14a promotes angiogenesis through upregulating PDGFA expression in colorectal cancer

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

2.466

2019

RNA-Seq

262

Chlorella

plant

The Complete Chloroplast Genome of Tetraselmis desikacharyi (Chlorodendrophyceae) and Phylogenetic Analysis

Mitochondrial DNA Part B

0.48

2019

chloroplast Sequencing

263

Flatworm

animal

Complete mitogenome of the giant invasive hammerhead flatworm Bipalium kewense

MITOCHONDR DNA part B

0.488

2019

MtDNA sequencing

264

virus

microorganism

The complete nucleotide sequence and genome organization of a novel virus of the order Tymovirales isolated from Prunus davidiana (Carr.) Franch. in Liaoning, China

Archives of Virology

2.058

2019

Small RNA

265

Monascus

microorganism

A Comprehensive Analysis of the Small GTPases Ypt7 Involved in the Regulation of Fungal Development and Secondary Metabolism in Monascus ruber M7

Frontiers in Microbiology

4.076

2019

RNA-Seq

266

corn

plant

Maize VIVIPAROUS1 Interacts with ABA INSENSITIVE5 to Regulate GALACTINOL SYNTHASE2 Expression Controlling Seed Raffinose Accumulation

Journal of Agricultural and Food Chemistry

3.154

2019

RNA-Seq

267

Human cell line

human

Exosome-Mediated Delivery of Inducible miR-423-5p Enhances Resistance of MRC-5 Cells to Rabies Virus Infection

International Journal of Molecular Sciences

3.226

2019

Small RNA

268

Human cell line

human

MicroRNA profiling of plasma exosomes from patients with ovarian cancer using high?throughput sequencing

Oncology  Letters

1.664

2019

Small RNA

269

Zebrafish

animal

Acute exposure to ustiloxin A affects growth and development of early life zebrafish, Danio rerio

Chemosphere

4.208

2019

RNA-Seq

270

Mouse

animal

Identification of key genes, pathways, and miRNA/mRNA regulatory networks of CUMS-induced depression in nucleus accumbens by integrated bioinformatics analysis

Neuropsychiatric Disease and Treatment

2.198

2019

RNA-seq&Small RNA

271

metagenome

microorganism

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

bioRxiv

2019

metagenome

272

human

human

Identifying a BRCA2 c.5722_5723del mutation in a Han-Chinese family with breast cancer

BIOSCIENCE REPORTS

2.906

2019

WES

273

Sorghum

plant

Characterization of the complete chloroplast genome of the Chinese sorghum, Sorghum bicolor from China

MITOCHONDR DNA part B

0.488

2019

chloroplast Sequencing

274

Whale

animal

The Marine Mammal Class II Major Histocompatibility Complex Organization

Frontiers in Immunology

6.429

2019

WGS

275

grass carp

animal

Transcriptome analysis of rare minnow (Gobiocypris rarus) infected by the grass carp reovirus

Fish & Shellfish Immunology

3.185

2019

RNA-Seq

276

Human cell line

human

Irradiation-induced dynamic changes of gene signatures reveal gain of metastatic ability in nasopharyngeal carcinoma

American Journal of Cancer Research

3.998

2019

RNA-Seq

277

Cartilage fish

animal

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

bioRxiv

2019

WGS&Hi-C library&RNA-Seq

278

human

human

Novel DPY19L2 variants in globozoospermic patients and the overcoming this male infertility

ASIAN JOURNAL OF ANDROLOGY

3.259

2019

WES

279

Mouse

animal

Pharmacological and transcriptome profiling analyses of Fufang E'jiao Jiang during chemotherapy-induced myelosuppression in mice

Journal of Ethnopharmacology

3.115

2019

RNA-Seq

280

human

human

Whole genome sequencing reveals complexity in both HPV sequences present and HPV integrations in HPV-positive oropharyngeal squamous cell carcinomas

BMC Cancer

3.288

2019

WGS

281

Cattle

animal

Genomic variants identified from whole-genome resequencing of indicine cattle breeds from Pakistan

Plos one

2.766

2019

WGS

282

frog

animal

Integrated mRNA and miRNA expression profile analyses reveal the potential roles of sexbiased miRNAmRNA pairs in gonad tissues of the Chinese concaveeared torrent frog (Odorrana tormota)

JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

2.432

2019

RNA-seq&Small RNA

283

Arabidopsis thaliana

plant

The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis

PLOS.Genetics

5.54

2019

RNA-Seq

284

Collembola

animal

Developmental Expression and Evolution of Hexamerin and Hemocyanin from Folsomia candida (Collembola)

INSECT MOLECULAR BIOLOGY

2.492

2019

RNA-Seq

285

Mouse

animal

Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism

Cell Reports

8.282

2019

RNA-Seq

286

human

human

Frizzled 2induced epithelialmesenchymal transition correlates with vasculogenic mimicry, stemness, and Hippo signaling in hepatocellular carcinoma

cancer science

4.372

2019

RNA-Seq

287

Streptococcus thermophilus

microorganism

Study on high throughput sequencing genomic DNA extraction of streptococcus scarlet fever

South China Journal Of Preventive Medicine(china)

2019

Pathogen detection

288

broad bean

plant

Identification and Characterization of Salt-Responsive MicroRNAs in Vicia faba by High-Throughput Sequencing

genes

3.191

2019

Small RNA

289

Human cell line

human

Ai-lncRNA EGOT enhancing autophagy sensitizes paclitaxel cytotoxicity via upregulation of ITPR1 expression by RNA-RNA and RNA-protein interactions in human cancer

Molecular Cancer

7.776

2019

ChIP-seq

290

human

human

Single cell RNA sequencing reveals cellular diversity of trisomy 21 retina

bioRxiv

2019

scRNA-Seq

291

human

human

Single cell RNA-seq reveals cellular diversity and developmental characteristics of human infant retina

bioRxiv

2019

scRNA-Seq

292

corn

plant

Transcriptome Dynamics of Double Recessive Mutant, o2o2o16o16, Reveals the Transcriptional Mechanisms in the Increase of Its Lysine and Tryptophan Content in Maize

genes

3.191

2019

RNA-Seq

293

Human cell line

human

LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags

bioRxiv

2019

MtDNA sequencing

294

Mouse

animal

YAP Aggravates Inflammatory Bowel Disease by Regulating M1/M2 Macrophage Polarization and Gut Microbial Homeostasis

Cell Reports

8.282

2019

RNA-Seq

295

Mouse

animal

Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate

CELL RESEARCH

15.393

2019

RNA-Seq

296

Zebrafish

animal

Primary cilia regulate hematopoietic stem and progenitor cell specification through Notch signaling in zebrafish

Nature Communications

12.124

2019

RNA-seq

297

Human cell line

human

Translation of the circular RNA circβ-catenin promotes liver cancer cell growth through activation of the Wnt pathway

Genome Biology

13.214

2019

RNA-seq

298

Monarch butterfly

animal

Transcriptomics of monarch butterflies (Danaus plexippus) reveals strong differential gene expression in response to host plant toxicity, but weak response to parasite infection

bioRxiv

2019

RNA-seq

299

metagenome

microorganism

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must

Frontiers in Microbiology

4.076

2019

metagenome

300

Soy

plant

Integration of metabolome and transcriptome analyses highlights soybean roots responding to phosphorus deficiency by modulating phosphorylated metabolite processes

Plant Physiology and Biochemistry

2.718

2019

RNA-seq

301

Human cell line

human

ZBTB24 regulates the apoptosis of human T cells via CDCA7/TRAIL-receptor axis

Biochemical and Biophysical Research Communications

2.559

2019

RNA-seq

302

yeast

microorganism

High production of fatty alcohols in Yarrowia lipolytica by coordination with glycolysis

Science China Chemistry

2019

RNA-seq

303

Human cell line

human

A reference system for BRCA mutation detection based on next-generation sequencing in the Chinese population

JOURNAL OF MOLECULAR DIAGNOSTICS

4.88

2019

capture

304

pig

animal

Transcriptomic analysis of small intestinal mucosa from porcine epidemic diarrhea virus infected piglets

Microbial Pathogenesis

2.332

2019

RNA-seq

305

Human cell line

human

Nobiletin exhibits potent inhibition on tumor necrosis factor alphainduced calcification of human aortic valve interstitial cells via targeting ABCG2 and AKR1B1

Phytotherapy researcch

3.349

2019

RNA-seq

306

Human cell line

human

Establishment and characterization of a novel childhood acute lymphoblastic leukemia cell line, HXEX-ALL1, with chromosome 9p and 17p deletions

Cancer Cell International

3.96

2019

WGS

307

Human cell line

human

Nutrient Sensing by the Intestinal Epithelium Orchestrates Mucosal Antimicrobial Defense via Translational Control of Hes1

Cell Host & Microbe

17.872

2019

RNA-seq

308

Human cell line

human

Genetic Regulation of enoyl-CoA hydratase Domain-Containing 3 in Adipose Tissue Determines Insulin Sensitivity in African Americans and Europeans

DIABETES

7.273

2019

RNA-seq

309

Mouse

animal

Dean flow assisted single cell and bead encapsulation for high performance single cell expression profiling

ACS Sensors

5.711

2019

scRNA-Seq

310

human

human

Germline-encoded TCR-MHC contacts promote TCR V gene bias in umbilical cord blood T cell repertoire

bioRxiv

2019

MHC capture

311

Muhe

plant

Anticandidal Potential of Stem Bark Extract from Schima superba and the Identification of Its Major Anticandidal Compound

molecule

3.098

2019

RNA-seq

312

Mouse

animal

Rescue of Retinal Degeneration in rd1 Mice by Intravitreally Injected Metformin

frontiers in Molecular Neuroscience

3.902

2019

RNA-seq

313

Pathogen

microorganism

Clinical value of whole genome sequencing in severe sepsis and cluster nursing intervention

Journal of clinical and Pathological Research(china)

2019

Pathogen detection

314

Pathogen

microorganism

The application of next-generation sequencing in diagnosing invasive pulmonary aspergillosis:three case reports

American Journal of Translational Research

3.061

2019

Pathogen detection

315

Bovine herpesvirus 1

microorganism

Cellular microRNA bta-miR-2361 inhibits bovine herpesvirus 1 replication by directly targeting EGR1 gene

Veterinary Microbiology

2.524

2019

Pathogen detection

316

Zebrafish

animal

Estrogen accelerates heart regeneration by promoting inflammatory responses in zebrafish

bioRxiv

2019

RNA-seq

317

umbilical cord blood cell

human

Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood

GigaScience

7.267

2019

scRNA-Seq

318

Mouse

animal

Short-term High Fructose Intake Reprograms the Transcriptional Clock Rhythm of the Murine Extraorbital

Investigative Ophthalmology & Visual Science

3.388

2019

RNA-seq

319

Human cell line

human

Sequential treatment failures in response to BRAF/MEK and immune checkpoint inhibitors mediated by MAP2K2 and B2M mutations in melanoma

Experimental and Molecular Pathology

2.566

2019

WES

320

Human cell line

human

Cancerassociated fibroblasts contribute to cisplatin resistance by modulating ANXA3 in lung cancer cells

cancer science

4.372

2019

RNA-seq

321

human

human

Genetic and clinical findings in a large cohort of Chinese patients with suspected retinitis pigmentosa

AMERICAN JOURNAL OF OPHTHALMOLOGY

4.795

2019

WES

322

human

human

Bismuth drugs tackle Porphyromonas gingivalis and attune cytokine response in human cells

Metallomics

4.069

2019

RNA-seq

323

Mouse

animal

Ferulic acid altered IL-17A/IL-17RA interaction and protected against imiquimod-induced psoriasis-like skin injury in mice

Food and Chemical Toxicology

3.977

2019

RNA-seq

324

Mouse

animal

Alterations in transcriptome and antioxidant activity of naturally aged mice exposed to selenium-rich rice

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

2.8

2019

RNA-seq

325

Mouse

animal

Integrated Omics Reveals Tollip as an Aggravator and Therapeutic Target for Hepatic IschemiaReperfusion Injury in Mice

hepatology

13.246

2019

RNA-seq

326

human

human

Screening, prenatal diagnosis, and prenatal decision for sex chromosome aneuploidy

Expert Review of Molecular Diagnostics

3.326

2019

NIFTY

327

human

human

Breast milk alkylglycerols sustain beige adipocytes through adipose tissue macrophages

JOURNAL OF CLINICAL INVESTIGATION

13.251

2019

RNA-seq

328

Zebrafish

animal

Loss-of-function of sox3 causes follicle development retardation and reduces fecundity in zebrafish

Protein & Cell

6.228

2019

RNA-seq

329

Rice

plant

A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice

JOURNAL OF EXPERIMENTAL BOTANY

5.354

2019

RNA-seq

330

Echinococcus

animal

Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1

Parasites & Vectors

3.163

2019

MtDNA sequencing

331

Mouse

animal

Embryoid body-based RNA-seq analyses reveal a potential TBBPA multifaceted developmental toxicity

Journal of Hazardous Materials

6.434

2019

RNA-seq

332

Human cell line

human

Glutaminyl cyclase inhibitor contributes to the regulation of HSP70, HSP90, actin, and ribosome on gene and protein levels in vitro

JOURNAL OF CELLULAR BIOCHEMISTRY

2.959

2018

RNA-seq

333

Next-Generation Sequencing and Emerging Technologies

SEMINARS IN THROMBOSIS AND HEMOSTASIS

3.345

2019

review

334

palmatum

plant

Comparative transcriptome analysis of genes involved in response to thermal stress and leaf colour change of Acer palmatum

Scientia Horticulturae

1.624

2019

RNA-seq

335

Human cell line

human

ZEB1 Represses Neural Differentiation and Cooperates with CTBP2 to Dynamically Regulate Cell Migration during Neocortex Development

cell reports

8.282

2019

RNA-seq

336

Rat

animal

Transcriptome profiling of dorsal root ganglia in a rat model of complex regional pain syndrome type-I reveals potential mechanisms involved in pain

Journal of Pain Research

2.645

2019

RNA-seq

337

crab

animal

Transcriptomic analysis provides insight into the mechanism of salinity adjustment in swimming crab Portunus trituberculatus

Genes & Genomics

0.68

2019

RNA-seq

338

virus

microorganism

Full genome sequence of a novel potexvirus from Euonymus bungeanus Maxim based on RNA-Seq analysis

Archives of Virology

2.16

2019

RNA-seq

339

Mouse

animal

Hepatic Interferon Regulatory Factor 6 Alleviates Liver Steatosis and Metabolic Disorder by Transcriptionally Suppressing Peroxisome ProliferatorActivated Receptor γ in Mice

hepatology

13.246

2019

RNA-seq

340

actinobacterium

microorganism

Aeromicrobium endophyticum sp. nov., an endophytic actinobacterium isolated from reed (Phragmites australis)

Journal of Microbiology

2.319

2019

WGS

341

human

human

Analysis of Normal Tissues Adjacent to the Tumour-specific expressed genes in Breast Cancer

Hereditas(Beijing)

2019

RNA-seq

342

E.coli

microorganism

Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification

frontiers in genetics

4.151

2019

RNA-seq

343

Human cell line

human

The E3 ligase VHL promotes follicular helper T cell differentiation via glycolytic-epigenetic control

JOURNAL OF EXPERIMENTAL MEDICINE

10.79

2019

RNA-seq

344

Arabidopsis thaliana

plant

mTERF5 Acts as a Transcriptional Pausing Factor to Positively Regulate Transcription of Chloroplast psbEFLJ

molecular plant

9.326

2019

RNA-seq

345

metagenome

microorganism

Altered respiratory virome and serum cytokine profile associated with recurrent respiratory tract infections in children

Nature Communications

12.124

2019

Pathogen detection

346

SEQdata-BEACON: a comprehensive database of sequencing performance and statistical tools for performance evaluation and yield simulation in BGISEQ-500

bioRxiv

2019

Database&statistical tools

347

Human cell line

human

Pyroptosis of MCF7 Cells Induced by the Secreted Factors of hUCMSCs

Stem Cells International

3.989

2019

RNA-seq

348

Human cell line

human

Prospect and challenge of detecting dynamic gene copy number increases in stem cells by whole genome sequencing

Journal of Molecular Medicine

4.938

2019

WGS

349

human

human

Germline DNA damage repair gene alterations in Chinese prostate patients: More than HRR and MMR

2019 ASCO Annual Meeting Abstracts

2019

WES

350

human

human

A multi-institutional investigation assessing prevalence of germline genetic alterations in Chinese patients with gastric carcinoma

2019 ASCO Annual Meeting Abstracts

2019

capture

351

Clinopodium chinense

plant

Transcriptome Analysis of Clinopodium chinense (Benth.) O. Kuntze and Identification of Genes Involved in Triterpenoid Saponin Biosynthesis

International Journal of Molecular Sciences

3.226

2019

RNA-seq

352

Mouse

animal

Transcriptional Profiling of Daily Patterns of mRNA Expression in the C57BL/6J Mouse Cornea

CURRENT EYE RESEARCH

2.12

2019

RNA-seq

353

metagenome

microorganism

Age-dependent sexual dimorphism in the adult human gut microbiota

bioRxiv

2019

metagenome

354

Chlorella

plant

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

bioRxiv

2019

RNA-seq

355

mouse

animal

Proteomics and Transcriptomics Analysis Reveals Clues into the Mechanism of the Beneficial Effect of Electrical Stimulation on Rat Denervated Gastrocnemius Muscle

Cellular Physiology and Biochemistry

5.5

2019

RNA-seq

356

human

human

Prenatal Diagnosis of Fetuses with Increased Nuchal Translucency by Genome Sequencing Analysis

bioRxiv

2019

CNV-seq

357

Human cell line

human

c-Jun Overexpressing CAR-T Cells are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity

bioRxiv

2019

RNA-seq

358

mouse

animal

Interleukin-17 receptor D constitutes an alternative receptor for interleukin-17A important in psoriasis-like skin inflammation

Science Immunology

2019

RNA-seq

359

mouse

animal

Activation of P-TEFb by cAMP-PKA signaling in autosomal dominant polycystic kidney disease

Science Advances

11.511

2019

RNA-Seq&ChIP-Seq

360

mouse

animal

The transcription factor Shox2 shapes thalamocortical neuron firing properties by regulation of key ion channels

bioRxiv

2019

RNA-seq

361

Arabidopsis thaliana

plant

Overexpression of AtAGT1 promoted root growth and development during seedling establishment

Plant Cell Reports

2.989

2019

RNA-seq

362

Human cell line

human

STYK1 promotes tumor growth and metastasis by reducing SPINT2/HAI-2 expression in non-small cell lung cancer

Cell Death & Disease

5.638

2019

RNA-seq

363

human

human

A truncating CLDN9 variant is associated with autosomal recessive nonsyndromic hearing loss

Human Genetics

3.93

2019

WGS

364

Pathogen

microorganism

The diagnostic value of metagenomic next-generation sequencing for identifying Streptococcus pneumoniae in paediatric bacterial meningitis

BMC Infectious Diseases

2.62

2019

Pathogen detection

365

Bacillus thuringiensis

microorganism

Transcriptome profiling analysis of the intoxication response in midgut tissue of Agrotis ipsilon larvae to Bacillus thuringiensis Vip3Aa protoxin

Pesticide Biochemistry and Physiology

3.44

2019

RNA-seq

366

human

human

Development of coupling controlled polymerizations by adapter-ligation in mate-pair sequencing for detection of various genomic variants in one single assay

DNA RESEARCH

5.415

2019

long mate pair library

367

Actualités du séquen?age dADN-Chroniques génomiques

Med Sci (Paris)

2019

review

368

All Aboard The Genome Exprees: Is a new generation of DNA sequencing technology about to hit the fast track?

Genetic Engineering & Biotechnology New

2019

review

369

Arthropod Genome Sequencing and Assembly Strategies

Insect Genomics

2019

review

370

Clinical metagenomic next-generation sequencing for pathogen detection 

Annual Review of Pathology: Mechanisms of Disease

2019

review

371

metagenome

microorganism

Exploring the human microbiome: The potential future role of next-generation sequencing in disease diagnosis and treatment

Frontiers in Immunology

5.511

2019

review

372

nasopharyngeal carcinoma

human

FOXA1 reprograms the TGF-β-stimulated transcriptional program from a metastasis promoter to a tumor suppressor in nasopharyngeal carcinoma

Cancer letters

6.491

2019

RNA-seq

373

High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis and meningitis A narrative review and clinical appraisal

Clinical Microbiology and Infection

5.394

2019

review

374

Caenorhabditis elegans

animal

Systematic evaluation of C elegans lincRNAs with CRISPR knockout mutants

Genome Biology

13.214

2019

lncRNA

375

Tobacco

plant

Tolerance of Transplastomic Tobacco Plants Overexpressing a Theta Class Glutathione Transferase to Abiotic and Oxidative Stresses

Front. Plant Sci

3.678

2019

RNA-Seq

376

haematococcus pluvialis

plant

Comparative transcriptome analysis of a long-time span two-step culture process reveals a potential mechanism for astaxanthin and biomass hyper-accumulation in Haematococcus pluvialis JNU35

Biotechnol Biofuels

5.497

2019

RNA-Seq&Transcriptome Sequencing

377

Mouse

animal

Identifcation of key genes, pathways, and miRNA/mRNA regulatory networks of CUMS-induced depression in nucleus accumbens by integrated bioinformatics analysis

Neuropsychiatric Disease and Treatment

2.195

2019

RNA-Seq&Small RNA

378

Wallemia mellicola

microorganism

Genomic Evidence of Recombination in the Basidiomycete Wallemia mellicola

genes

3.191

2019

WGS

379

gastric cancer

human

LncRNA TUBA4B functions as a competitive endogenous RNA to inhibit gastric cancer progression by elevating PTEN via sponging miR-214 and miR-216a/b

Cancer Cell International

3.96

2019

lncRNA

380

human

human

A comprehensive assessment of NextGeneration Sequencing variants validation using a secondary technology

Molecular Genetics & Genomic Medicine

2.695

2019

capture

381

Spodoptera frugiperda

animal

Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

bioRxiv

2019

stLFR

382

human

human

Differential Roles of the mTOR-STAT3 Signaling in Dermal γδ T Cell Effector Function in Skin Inflammation

cell reports

8.032

2019

RNA-seq

383

Mouse

animal

Hyaluronan synthase 2mediated hyaluronan production mediates Notch1 activation and liver fibrosis

Science Translational Medicine

16.71

2019

RNA-seq

384

gastric cancer

human

Hydroxychloroquine enhances the antitumor effects of BC001 in gastric cancer

International Journal of Oncology

3.333

2019

RNA-seq

385

rice

plant

The nuclear-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice

Journal of experimental botany

5.354

2019

RNA-seq

386

virus

microorganism

Differential expression profiling of lncRNAs related to EpsteinBarr virus infection in epithelial cells

JOURNAL OF MEDICAL VIROLOGY

1.988

2019

lncRNA

387

Pathogen

microorganism

Metagenomic Next-generation Sequencing of Cerebrospinal Fluid for the Diagnosis of Central Nervous System Infections: A Multicentre Prospective Study

bioRxiv

2019

Pathogen detection

388

plant

A symbiotic balancing act: arbuscular mycorrhizal specificity and specialist fungus gnat pollination in the mycoheterotrophic genus Thismia (Thismiaceae)

Annals of Botany

3.646

2019

WGS

389

Lotus

plant

Transcription Profiles Reveal the Regulatory Synthesis of Phenols during the Development of Lotus Rhizome (Nelumbo nucifera Gaertn)

International Journal of Molecular Sciences

3.687

2019

RNA-seq

390

Atlantic herring

animal

A chromosome-level assembly of the Atlantic herring detection of a supergene and other signals of selection

bioRxiv

2019

Hi-C library

391

metagenome

microorganism

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-na?ve type 2 diabetics

bioRxiv

2019

metagenome

392

lung cancer

human

Irradiation increases the immunogenicity of lung cancer cells and irradiation-based tumor cell vaccine elicits tumor-specific T cell responses in vivo

OncoTargets and Therapy

2.656

2019

RNA-seq

393

Mouse

animal

Changes in mRNA of liver immune-related genes in obese mice induced by long-term high-fat diet

chinese Journal of cellular and molecular immunology(china)

2019

RNA-seq

394

Pathogen

microorganism

Diagnosis of osteoarticular tuberculosis via metagenomic next?generation sequencing: A case report

Experimental and Therapeutic Medicine

1.41

2019

Pathogen detection

395

anemone

animal

Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia)

Archives of Toxicology

5.728

2019

RNA-seq

396

CD4+ T cells

human

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells

bioRxiv

2019

scRNA-Seq

397

Chicken

animal

Integrative Analyses of mRNA Expression Profile Reveal the Involvement of IGF2BP1 in Chicken Adipogenesis

International Journal of Molecular Sciences

4.183

2019

RNA-seq

398

human

human

Muscle-strain injury exudate favors acute tissue healing and prolonged connective tissue formation in humans

FASEB JOURNAL

5.391

2019

RNA-seq

399

Medicago truncatula

plant

MtBZR1 Plays an Important Role in Nodule Development in Medicago truncatula

International Journal of Molecular Sciences

4.183

2019

RNA-seq

400

Lung adenocarcinoma

human

Lung adenocarcinoma-intrinsic GBE1 signaling inhibits anti-tumor immunity

BMC Genomics

3.501

2019

RNA-seq

401

pig

animal

Comprehensive transcriptomic view of the role of the LGALS12 gene in porcine subcutaneous and intramuscular adipocytes

Molecular Cancer

10.679

2019

RNA-seq

402

human

human

Delta-like ligand 4/DLL4 regulates the capillarization of liver sinusoidal endothelial cell and liver fibrogenesis

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

4.739

2019

RNA-seq

403

Tea Polyphenols

plant

Pathogenic Effects and Potential Regulatory Mechanisms of Tea Polyphenols on Obesity

BioMed Research International

2.197

2019

Small RNA

404

sarcoma

human

Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

BMC Cancer

2.933

2019

WES

405

hepar

human

Hepatocyte TRAF6 Aggravates Hepatic Inflammation and Fibrosis by Promoting Lys6 Linked Polyubiquitination of ASK1

hepatology

14.971

2019

RNA-seq

406

human

human

Clinical diagnosis of single-gene disorders and chromosomal abnormalities based on BGISEQ-500 platform

bioRxiv

2019

capture

407

metagenome

microorganism

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

bioRxiv

2019

metagenome

408

human

human

Mixed-lineage leukemia protein 2 suppresses ciliary assembly by the modulation of actin dynamics and vesicle transport

Cell Discovery

4.6

2019

RNA-seq

409

Human cell line

human

Systematic comparison of germline variant calling pipelines cross multiple next-generation sequencers

Scientific Reports

4.01

2019

WGS&WES

410

noroviruses

microorganism

Replication and transcriptionomic analysis of human noroviruses in human intestinal enteroids

American Journal of Translational Research

3.266

2019

RNA-seq

411

Goose

animal

Endoplasmic Reticulum Stress Marker Gene Grp78 Is Involved in Regulation of Immune/Inflammatory State of Goose Fatty Liver

Acta Veterinaria et Zootechnica Sinica(china)

2019

RNA-seq

412

metagenome

microorganism

Alterations in the human gut microbiome associated with Helicobacter pylori infection

FEBS open bio

1.959

2019

metagenome

413

human

human

Expanding the Clinical Spectrum of Osteogenesis Imperfecta Type V: 13 Additional Patients and Review

Frontiers in Endocrinology

3.634

2019

WES

414

Tea

plant

Integrated transcriptomic and phytochemical analyses provide insights into characteristic metabolites variation in leaves of 1-year-old grafted tea (Camellia sinensis)

Tree Genetics & Genomes

1.862

2019

RNA-seq

415

leukocyte

human

Assessment of the gene expression profiles of leukocytes from different isolations

bioRxiv

2019

RNA-seq

416

carcinoma

human

Fumaratehydratase-deficient renal cell carcinoma: a clinicopathological and molecular study of 13 cases

Journal of Clinical Pathology

2.346

2019

WGS

417

Yellow Mottle Disease

microorganism

Identification and Characterization of a Novel Emaravirus Associated With Jujube (Ziziphus jujuba Mill.) Yellow Mottle Disease

Frontiers in Microbiology

4.259

2019

Small RNA

418

Neuroblastoma

human

Exosomal hsa-miR199a-3p Promotes Proliferation and Migration in Neuroblastoma

Frontiers in oncology

4.137

2019

Small RNA

419

breast cancer

human

CD137 promotes bone metastasis of breast cancer by enhancing the migration and osteoclast differentiation of monocytes/macrophages

Theranostics

8.063

2019

RNA-seq

420

Human cell line

human

Fas signaling-mediated TH9 cell differentiation favors bowel inflammation and antitumor functions

Nature Communications

11.878

2019

RNA-seq

421

Arabidopsis thaliana

plant

RAP2.4c and RAP2.4d in the regulation of cold stress and cold priming in Arabidopsis thaliana

REPOSITORIUM DER FREIEN UNIVERSIT?T BERLIN(Germany)

2019

RNA-seq

422

chronic lymphocytic leukemia

human

Elevated FANCA expression determines a worse prognosis in chronic lymphocytic leukemia and interferes with p53 function

FASEB JOURNAL

5.391

2019

RNA-seq

423

Melanocytes

human

The Long Noncoding RNA UCA1 Negatively Regulates Melanogenesis in Melanocytes

Journal of Investigative Dermatology

6.29

2019

lncRNA

424

Poncirus trifoliata

plant

Enhanced ROS scavenging and sugar accumulation contribute to drought tolerance of naturally occurring autotetraploids in Poncirus trifoliata

PLANT BIOTECHNOLOGY JOURNAL

6.84

2018

RNA-seq

425

Ancient Mammals

animal

Improving Species Identification of Ancient Mammals Based on Next-Generation Sequencing Data

genes

3.331

2019

WGS

426

metagenome

microorganism

Compositional and functional features of the female premenopausal and postmenopausal gut microbiota

FEBS LETTERS

2.675

2019

metagenome

427

Pathogen

microorganism

Genome-wide Transcript Structure Resolution Reveals Abundant Alternate Isoform Usage from Murine Gammaherpesvirus 68

cell reports

7.82

2019

RNA-seq

428

CADASIL

human

Novel and Recurring NOTCH3 Mutations in Two Chinese Patients with CADASIL

Neurodegenerative Diseases

2.80

2019

WES

429

metagenome

microorganism

A survey of the sperm whale (Physeter catodon) commensal microbiome

PeerJ

2.35

2019

metagenome

430

nasopharyngeal carcinoma

human

DHRS2 mediates cell growth inhibition induced by Trichothecin in nasopharyngeal carcinoma

Journal of Experimental & Clinical Cancer Research

5.65

2019

RNA-seq

431

metagenome

microorganism

Calorie restriction intervention induces enterotype-associated BMI loss in nonobese individuals

bioRxiv

2019

metagenome

432

Scutellaria

plant

The complete chloroplast genome of Scutellaria indica var. coccinea (Lamiaceae), an endemic taxon in Korea

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

433

Firmiana

plant

Comparative analyses of chloroplast genomes among three Firmiana species: Identification of mutational hotspots and phylogenetic relationship with other species of Malvaceae

plant gene

2019

chloroplast Sequencing

434

Immune Cell

human

A Single-Cell Immune Atlas of Triple Negative Breast Cancer Reveals Novel Immune Cell Subsets

bioRxiv

2019

scRNA-Seq

435

Candida albicans

microorganism

Susceptibility to Medium-Chain Fatty Acids Is Associated with Trisomy of Chromosome 7 in Candida albicans

mSphere

4.447

2019

WGS

436

Cancer Cells

human

Engineering Forward Genetics into Cultured Cancer Cells for Chemical Target Identification

cell chemical biology

6.762

2019

WES

437

zebrafish

animal

Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification

Nature Communications

11.878

2019

RNA-seq

438

Monascus

microorganism

Effects of Different G-Protein α-Subunits on Growth, Development and Secondary Metabolism of Monascus ruber M7

Frontiers in Microbiology

4.259

2019

RNA-seq

439

banana

plant

Characterization of the complete chloroplast genome of Sanming wild banana (Musa itinerans) and phylogenetic relationships

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

440

kumquat

plant

Characterization of the complete chloroplast genome of the Hongkong kumquat (Fortunella hindsii Swingle)

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

441

Pedicularis

plant

The complete chloroplast genome of Pedicularis alaschanica (Orobanchaceae)

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

442

Kuepferia otophora

plant

The complete chloroplast genome sequence of an Alpine flowering plant Kuepferia otophora (Gentianaceae)

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

443

bacteria

microorganism

Response of Cupriavidus basilensis B-8 to CuO nanoparticles enhances Cr(VI) reduction

Science of The Total Environment

5.59

2019

RNA-seq

444

Human cell line

human

RNA-Bloom provides lightweight reference-free transcriptome assembly for single cells

bioRxiv

2019

scRNA-Seq

445

Passiflora edulia Sims

plant

Characterization of the complete chloroplast genome of a purple passion flower variety Pingtang No.1 (Passiflora edulia Sims) in China and phylogenetic relationships

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

446

Tetraena mongolica Maxim

plant

De novo transcriptome sequencing and identification of genes related to salt and PEG stress in Tetraena mongolica Maxim

Trees

1.799

2019

De novo transcriptome

447

Nasopharyngeal Carcinoma

human

Detection and Analysis of RNAs Expression Profile for Methylated Candidate Tumor Suppressor Genes in Nasopharyngeal Carcinoma

Anti-Cancer Agents in Medicinal Chemistry

2.18

2019

RNA-seq

448

colorectal cancer cells

human

Exosomal transfer of p-STAT3 promotes acquired 5-FU resistance in colorectal cancer cells

Journal of Experimental & Clinical Cancer Research

5.65

2019

RNA-seq

449

human embryonic stem cell

human

Toxicogenomic analyses of the effects of BDE-47/209, TBBPA/S and TCBPA on early neural development with a human embryonic stem cell in vitro differentiation system

Toxicology and Applied Pharmacology

3.585

2019

RNA-seq

450

Lactobacillus casei

microorganism

A single bacterium restores the microbiome dysbiosis to protect bones from destruction in a rat model of rheumatoid arthritis

Microbiome

10.465

2019

metagenome

451

Gomphonemopsis sieminskae

plant

Morphology and molecular phylogeny of Gomphonemopsis sieminskae sp. nov. isolated from brackish waters of the East China Sea coast

Plant and Fungal Systematics

2019

WGS

452

metagenome

microorganism

Gut microbiome affects the response to anti-PD-1 immunotherapy in patients with hepatocellular carcinoma

Journal for ImmunoTherapy of Cancer

8.68

2019

metagenome

453

Human cell line

human

Impact of sequencing depth and technology on de novo RNA-Seq assembly

BMC Genomics

3.501

2019

De novo transcriptome

454

Gerbera jamesonii Bolus

plant

Characterization of the complete chloroplast genome of Gerbera jamesonii Bolus in China and phylogenetic relationships

Mitochondrial DNA Part B-Resources

0.561

2019

chloroplast Sequencing

455

human

human

Identification of a novel EVC variant in a HanChinese family with Ellisvan Creveld syndrome

Molecular Genetics & Genomic Medicine

2.448

2019

WES

456

Arabidopsis thaliana

plant

m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants

current biology

9.193

2019

MeRIP

457

Glioblastoma

human

GenomeWide CRISPRCas9 Screening Identifies NF‐κB/E2F6 Responsible for EGFRvIIIAssociated Temozolomide Resistance in Glioblastoma

Advanced Science

15.804

2019

RNA-seq

458

Haemonchus contortus

animal

Dafachronic acid promotes larval development in Haemonchus contortus by modulating dauer signalling and lipid metabolism

PLoS Pathogens

6.463

2019

RNA-seq

459

Phanerochaete chrysosporium

microorganism

Sulfadiazine biodegradation by Phanerochaete chrysosporium: Mechanism and degradation product identification

Chemosphere

5.108

2019

RNA-seq

460

mouse

animal

Regulation of the inflammatory response by vascular grafts modified with Aspirin-Triggered Resolvin D1 promotes blood vessel regeneration

Acta Biomaterialia

6.638

2019

RNA-seq

461

Barley

plant

Knockout of the HvCKX1 or HvCKX3 Gene in Barley (Hordeum vulgare L.) by RNA-Guided Cas9 Nuclease Affects the Regulation of Cytokinin Metabolism and Root Morphology

Cells

5.656

2019

RNA-seq

462

tobacco

plant

Expression of AtLEC2 and AtIPTs promotes embryogenic callus formation and shoot regeneration in tobacco

BMC Plant Biology

3.67

2019

RNA-seq

463

insect

plant

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

GigaScience

7.27

2019

review

464

soybean

plant

Transcriptomic analysis reveals the possible roles of sugar metabolism and export for positive mycorrhizal growth responses in soybean

Physiologia Plantarum

3.00

2018

RNA-seq

465

periodontitis

human

M1 macrophages regulate TLR4/AP1 via paracrine to promote alveolar bone destruction in periodontitis

Oral Diseases

2.63

2019

RNA-seq

466

Human cell line

human

Epigenetic alterations are associated with tumor mutation burden in non-small cell lung cancer

Journal for ImmunoTherapy of Cancer

8.676

2019

WES

467

Chelmon rostratus

animal

Chromosome-level genome assembly of a butterflyfish, Chelmon rostratus

bioRxiv

2019

stLFR

468

Human cell line

human

Identification of Main Genetic Causes Responsible for Non-Syndromic Hearing Loss in a Peruvian Population

genes

3.331

2019

WGS

469

Human cell line

human

Bioinformatic Analysis of Transcriptomic Data Reveals Novel Key Genes Regulating Osteogenic Differentiation of Human Adipose Stem Cells

Stem Cells International

3.902

2019

RNA-seq

470

mice

animal

Hyperuricemia is associated with impaired intestinal permeability in mice

American Journal of Physiology-Gastrointestinal and Liver Physiology

3.729

2019

RNA-seq

471

Aspergillus cristatus

microorganism

Genetic Basis and Function of Mating-Type Genes in Aspergillus cri